View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5148-Insertion-6 (Length: 454)

Name: NF5148-Insertion-6
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5148-Insertion-6
NF5148-Insertion-6
[»] chr2 (6 HSPs)
chr2 (8-454)||(19377398-19377835)
chr2 (118-378)||(36204767-36205028)
chr2 (118-378)||(18746525-18746783)
chr2 (118-378)||(19899324-19899584)
chr2 (388-454)||(18746845-18746911)
chr2 (388-454)||(36204638-36204704)
[»] chr5 (1 HSPs)
chr5 (118-319)||(1290158-1290359)
[»] chr8 (3 HSPs)
chr8 (246-378)||(27286458-27286589)
chr8 (388-454)||(27286651-27286717)
chr8 (118-190)||(27284111-27284183)
[»] chr3 (2 HSPs)
chr3 (118-383)||(9120526-9120790)
chr3 (388-454)||(9120835-9120901)
[»] chr6 (3 HSPs)
chr6 (226-378)||(8839709-8839860)
chr6 (388-454)||(8839581-8839647)
chr6 (118-200)||(8839862-8839941)
[»] chr4 (2 HSPs)
chr4 (150-374)||(24521750-24521973)
chr4 (388-454)||(24522039-24522105)


Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Original strand, 19377398 - 19377835
Alignment:
Q  8 tgaatttctttagaaatgtgtagctaaatactttttggttctctttctgaattctttctactaacacacagcagcagccaccgttatctttcctcccctc 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19377398 tgaatttctttagaaacgtgtagctaaatactttttggttctctttctgaattctttctactaacacacagcagcagccaccgttatctttcctcccctc 19377497  T
Q  108 cccnnnnnnncaaattactccgacgagatgtagattcgcttgcggtggtgtgatgagtacctttgtccgccgcaccaccttttagtcgccagacttgccg 207  Q
    |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19377498 ccctttttttcaaattactccgacgagatgtagattcgcttgcggtggtgtgatgagtacctttgtcctccgcaccaccttttagtcgccagacttgccg 19377597  T
Q  208 gcggtgccatttgttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggc 307  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19377598 gcggtgctgtttgttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttctgatcggc 19377697  T
Q  308 ggaccctctgttcgttgtggcctgttttctgttggtgtcgaaaacccaaacaggggtagtcctcacaaccgccggtttcattggtttcatgattctgatc 407  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||    
T  19377698 ggaccctctgttcgttatggcctgttttctgttggtgtcgaaaacccaaacaggggtagtcctcacaactgcc---------ggtttcatgattctgatc 19377788  T
Q  408 tttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgac 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19377789 tttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgac 19377835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 118 - 378
Target Start/End: Complemental strand, 36205028 - 36204767
Alignment:
Q  118 caaattactccgacgagatgtagattcgcttgcggtggtgtgatgagtacctttgtccgccgcaccaccttttagtcgccagacttgccggcggtgccat 217  Q
    |||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||  |  |||||  |||      
T  36205028 caaattgctccggcgagatgtagattcggttgcggtggtgcgatgagtacctttgtcctccgcaccaccttttagtcgtcagatcttacggcgccgccgc 36204929  T
Q  218 ttgttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctg 317  Q
    |||||||||||||||| | || |||| ||||||||||||||||||| |||||||| ||||||||||||| || |||||||| |||||| ||||| || ||    
T  36204928 ttgttttcatcttttctggcggtctggcatatgggtttctataacgtgttggtgtttggttcgaccaccgtcgcgtctgttctgatcgacggacactgtg 36204829  T
Q  318 ttcgttgtggcctgttttctgttggtgtcgaaaacccaaaca-ggggtagtcctcacaaccg 378  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  36204828 ttcgttgtggcctgttttctattggtgtcgaaaacccaaacagggggtagtcctcacaaccg 36204767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 118 - 378
Target Start/End: Original strand, 18746525 - 18746783
Alignment:
Q  118 caaattactccgacgagatgtagattcgcttgcggtggtgtgatgagtacctttgtccgccgcaccaccttttagtcgccagacttgccggcggtgccat 217  Q
    |||||| ||||  ||||||||||||||| ||||||| ||| ||||||||||||||||  ||||||||||||||||||| |||| ||| |||||||||||     
T  18746525 caaatttctccatcgagatgtagattcggttgcggttgtgcgatgagtacctttgtcttccgcaccaccttttagtcgtcagatttgtcggcggtgccac 18746624  T
Q  218 ttgttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctg 317  Q
    ||||||||||||||| || || |||||||||||||||||||||| | |||||||| |   ||||||||||||  || || | |||||||||||| |||||    
T  18746625 ttgttttcatctttttcgacgatctgacatatgggtttctataatgcgttggtgtct--atcgaccaccatcgtgtttgctctgatcggcggacactctg 18746722  T
Q  318 ttcgttgtggcctgttttctgttggtgtcgaaaacccaaacaggggtagtcctcacaaccg 378  Q
    ||||| ||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  18746723 ttcgtcgtggcctgtttttcgtttgtgtcgaaaacccaaacaggggtagtcctcacaaccg 18746783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 118 - 378
Target Start/End: Original strand, 19899324 - 19899584
Alignment:
Q  118 caaattactccgacgagatgtagattcgcttgcggtggtgtgatgagtacctttgtccgccgcaccaccttttagtcgccagacttgccggcggtgccat 217  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||  | |||| || |||      
T  19899324 caaattgctccgacgagatgtagattcgtttgcggtggtgcgatgagtacctttgtcctccgcaccaccttttagtcgtcagatcttccggtggcgccgc 19899423  T
Q  218 ttgttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctg 317  Q
    |||||||| ||||||||   | |||| |||||| |||  ||||||| ||||||||||||||||| ||||||| ||| |||| ||||||| |||| || ||    
T  19899424 ttgttttcttcttttccagaggtctggcatatgagttcgtataacgcgttggtgtgtggttcgatcaccatcgcgtgtgttctgatcggtggacactttg 19899523  T
Q  318 ttcgttgtggcctgttttctgttggtgtcgaaaacccaaacaggggtagtcctcacaaccg 378  Q
    ||||| |||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||    
T  19899524 ttcgtcgtggcctgttttctgttgttgtcgatcacccaaacaagggtagtcctcacaaccg 19899584  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 18746845 - 18746911
Alignment:
Q  388 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgac 454  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  18746845 ttggtttcatgattatgatctttgaaggtgtgttatcgattcgtggtaggcgttatgatattttgac 18746911  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 36204704 - 36204638
Alignment:
Q  388 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgac 454  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||  |||||||||||    
T  36204704 ttggtttcatgattttgatatttgaaggtgtgtaatcgattcgaggtaggcgttccgatgttttgac 36204638  T

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Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 118 - 319
Target Start/End: Original strand, 1290158 - 1290359
Alignment:
Q  118 caaattactccgacgagatgtagattcgcttgcggtggtgtgatgagtacctttgtccgccgcaccaccttttagtcgccagacttgccggcggtgccat 217  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||  ||| || || |||||||||     
T  1290158 caaattgctccgacgagatgtagattcggttgcggtggtgtgatgagtacctttgtcctccgcaccaccttttagtcgttagattttccagcggtgccac 1290257  T
Q  218 ttgttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctg 317  Q
    ||||||||||||||| || |  |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||    
T  1290258 ttgttttcatctttttcggcagtctgacatatgggtttctataacgtgttggtgtgtggttcgaccaccatcacctctgttctgatcggcggaccctttg 1290357  T
Q  318 tt 319  Q
    ||    
T  1290358 tt 1290359  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 246 - 378
Target Start/End: Original strand, 27286458 - 27286589
Alignment:
Q  246 atatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttcgttgtggcctgttttctgttggtgt 345  Q
    |||||||||||||||||| |||||| |||| |||||||||| || |||||||| |||||||||||| || ||||||| |||||||| ||| |||||||||    
T  27286458 atatgggtttctataacgcgttggtatgtgattcgaccaccgtcgcgtctgttctgatcggcggacactttgttcgtcgtggcctg-tttatgttggtgt 27286556  T
Q  346 cgaaaacccaaacaggggtagtcctcacaaccg 378  Q
    |||||||||||||||||||||||||||||||||    
T  27286557 cgaaaacccaaacaggggtagtcctcacaaccg 27286589  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 27286651 - 27286717
Alignment:
Q  388 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgac 454  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27286651 ttggtttcacgattctaatctttgaaggtgtgttatcgattcgaggtaggcgtttcgatgttttgac 27286717  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 27284111 - 27284183
Alignment:
Q  118 caaattactccgacgagatgtagattcgcttgcggtggtgtgatgagtacctttgtccgccgcaccacctttt 190  Q
    |||||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||    
T  27284111 caaattgctccaacgagatgtagattcggttgcggtggtgcgatgagtacctttgtcctccgcaccacctttt 27284183  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 118 - 383
Target Start/End: Original strand, 9120526 - 9120790
Alignment:
Q  118 caaattactccgacgagatgtagattcgcttgcggtggtgtgatgagtacctttgtccgccgcaccaccttttagtcgccagacttgccggcggtgccat 217  Q
    |||||| ||||  ||||||||||||||  || |||||||| |||||||||||||||||  |||||||||||||||||| |||  ||| ||   |  ||      
T  9120526 caaattgctccagcgagatgtagattcagttacggtggtgcgatgagtacctttgtccttcgcaccaccttttagtcgtcaggtttgtcgattggtccgc 9120625  T
Q  218 ttgttttcatcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctg 317  Q
    || |||||||||||||   || |||| ||||||||||| ||||| | |||||||||||||| ||||||||||  ||||||| ||||||||| || |||||    
T  9120626 tttttttcatcttttctcgcggtctggcatatgggttt-tataatgcgttggtgtgtggtttgaccaccatcgtgtctgttctgatcggcgaacactctg 9120724  T
Q  318 ttcgttgtggcctgttttctgttggtgtcgaaaacccaaacaggggtagtcctcacaaccgccggt 383  Q
    ||||  ||||||| ||||||| | |||||||||| ||||| |||| ||||||||||| ||| ||||    
T  9120725 ttcgacgtggcctattttctggtagtgtcgaaaagccaaatagggttagtcctcacatccgtcggt 9120790  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 9120835 - 9120901
Alignment:
Q  388 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgac 454  Q
    ||||||||||||||||||||||| ||||| || |||||||| ||||||||||||  |||||||||||    
T  9120835 ttggtttcatgattctgatcttttaaggtatgctatcgatttgaggtaggcgttccgatgttttgac 9120901  T

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Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 8839860 - 8839709
Alignment:
Q  226 atcttttccgtcgttctgacatatgggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttcgttgt 325  Q
    |||||||||| |  |||| ||||||||||||||||| | ||||||||||||||| ||||||||| |||||||| |||||| |||||  | ||||||| ||    
T  8839860 atcttttccggcagtctggcatatgggtttctataatgcgttggtgtgtggttccaccaccatcgcgtctgttctgatcgtcggacattatgttcgtcgt 8839761  T
Q  326 ggcctgttttctgttggtgtcgaaaacccaaacaggggtagtcctcacaaccg 378  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||||||||    
T  8839760 ggcctg-tttatgctggtgtcgaaaacccaaacaggggtagtcctcacaaccg 8839709  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 8839647 - 8839581
Alignment:
Q  388 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgac 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  8839647 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtagacgttccgatgttttgac 8839581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 8839941 - 8839862
Alignment:
Q  118 caaattactccgacgagatgtagattcgcttgcggtggtgtgatgagtacctttgtccgccgcaccaccttttagtcgccaga 200  Q
    |||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||   ||||| ||||||||||||| ||||    
T  8839941 caaattgctccggcgagatgtagattcggttgcggtggtgcgatgagtacctttgt---ccgcatcaccttttagtcgtcaga 8839862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 150 - 374
Target Start/End: Original strand, 24521750 - 24521973
Alignment:
Q  150 cggtggtgtgatgagtacctttgtccgccgcaccaccttttagtcgccagacttgccggcggtgccatttgttttcatcttttccgtcgttctgacatat 249  Q
    |||||||| ||||||||||||| |||  |||||||||||||||||| ||||  || ||  |||||   ||||||||||||||||   |  | || |||||    
T  24521750 cggtggtgcgatgagtacctttatccttcgcaccaccttttagtcgtcagatctgtcgatggtgctgcttgttttcatcttttctcgcagtatggcatat 24521849  T
Q  250 gggtttctataacgagttggtgtgtggttcgaccaccatcacgtctgttttgatcggcggaccctctgttcgttgtggcctgttttctgttggtgtcgaa 349  Q
    |||||| ||||| | |||||||||||||| ||||||||||  ||||||| ||||||||  || || ||||||| ||||||||||| ||||| ||||||||    
T  24521850 gggttt-tataatgcgttggtgtgtggtttgaccaccatcgtgtctgttctgatcggcaaacactatgttcgtcgtggcctgtttcctgttagtgtcgaa 24521948  T
Q  350 aacccaaacaggggtagtcctcaca 374  Q
    || ||||| |||| |||||||||||    
T  24521949 aagccaaaaagggttagtcctcaca 24521973  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 24522039 - 24522105
Alignment:
Q  388 ttggtttcatgattctgatctttgaaggtgtgttatcgattcgaggtaggcgttttgatgttttgac 454  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||  |||||||||||    
T  24522039 ttggtttcatgattctgatattttaaggtgtgctatcgattcgaggtaggagttccgatgttttgac 24522105  T

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