View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5148_high_13 (Length: 288)

Name: NF5148_high_13
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5148_high_13
NF5148_high_13
[»] chr2 (2 HSPs)
chr2 (10-269)||(1614879-1615133)
chr2 (14-225)||(24455997-24456209)
[»] chr8 (2 HSPs)
chr8 (14-217)||(43228241-43228444)
chr8 (169-217)||(14839275-14839323)
[»] chr3 (2 HSPs)
chr3 (161-213)||(49234306-49234358)
chr3 (161-213)||(49233735-49233787)
[»] chr7 (1 HSPs)
chr7 (169-217)||(27962367-27962415)
[»] chr1 (1 HSPs)
chr1 (161-212)||(50862691-50862741)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 1614879 - 1615133
Alignment:
Q  10 aagaaaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa 109  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1614879 aagaaaataagaaccaagagaacataagaaacaatctcaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaa 1614978  T
Q  110 agcaacaggagaacaatacaaacagccggttaaaaagacaatannnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||        |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  1614979 agcaacaggagaacaatacaaacagccggttaaaaagacaatattttttttgtaaattgagacaaaacgcatgaagacaaaggcaaagagaagaaaataa 1615078  T
Q  210 aaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaa 269  Q
    |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  1615079 aaccgatacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaa 1615133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 24456209 - 24455997
Alignment:
Q  14 aaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |    
T  24456209 aaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactatagagccaaactacaacaacctattcagaaaaacta 24456110  T
Q  114 acaggagaacaatacaaacagccggttaaaaagacaatannnnnnnngtaaattgagccaaaacaca-tgaagacaaaggcaaagagaagaaaataaaac 212  Q
    ||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  24456109 acaggagaacaatacaaacagccagttaaaaagacaataatttttttgtaaattgagccaaaacacacagaaaacaaaggcaaagagaagaaaataaaac 24456010  T
Q  213 cgatacggtgcag 225  Q
    ||||| |||||||    
T  24456009 cgatatggtgcag 24455997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 43228444 - 43228241
Alignment:
Q  14 aaataagaaccaagagaacataagaaacaatcccaaagaaaacaaagcaaaatcaactacactaaagagccaaactacaacaacctattctgaaaaagca 113  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43228444 aaatgagaaccaagagaacataagaaactatcccaaagaaaacaaaccaaaatcaactacactaaagagccaaactacaacaacctattctaaaaaagca 43228345  T
Q  114 acaggagaacaatacaaacagccggttaaaaagacaatannnnnnnngtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaacc 213  Q
    |||||||| |||||||||||||| |||||||||||| ||        |||||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  43228344 acaggagaccaatacaaacagccagttaaaaagacagtattttttttgtaaattgagccaaaacacacgaagaccaaggcaaagagaagaaagtaaaacc 43228245  T
Q  214 gata 217  Q
    ||||    
T  43228244 gata 43228241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 14839323 - 14839275
Alignment:
Q  169 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgata 217  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  14839323 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgata 14839275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 49234306 - 49234358
Alignment:
Q  161 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaacc 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  49234306 gtaaattgagccaaaacacatgaagaccaaggcaaagagaagaaattaaaacc 49234358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 49233735 - 49233787
Alignment:
Q  161 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaacc 213  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  49233735 gtaaattaagccaaaacacatgaagaccaaggcaaagagaagaaattaaaacc 49233787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 27962367 - 27962415
Alignment:
Q  169 agccaaaacacatgaagacaaaggcaaagagaagaaaataaaaccgata 217  Q
    ||||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  27962367 agccaaaacacttgaagacagaggaaaagagaagaaaataaaaccgata 27962415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 50862741 - 50862691
Alignment:
Q  161 gtaaattgagccaaaacacatgaagacaaaggcaaagagaagaaaataaaac 212  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  50862741 gtaaattga-ccaaaacacatgaagaccaaggcaaagagaagaaattaaaac 50862691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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