View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5148_high_16 (Length: 252)

Name: NF5148_high_16
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5148_high_16
NF5148_high_16
[»] chr5 (2 HSPs)
chr5 (13-252)||(8209683-8209922)
chr5 (121-221)||(6655594-6655694)
[»] chr8 (2 HSPs)
chr8 (142-221)||(16978000-16978081)
chr8 (100-221)||(33071656-33071777)
[»] chr1 (2 HSPs)
chr1 (142-221)||(44090991-44091070)
chr1 (98-228)||(22891709-22891839)
[»] chr4 (2 HSPs)
chr4 (146-221)||(13713997-13714072)
chr4 (142-221)||(32736740-32736819)
[»] chr3 (1 HSPs)
chr3 (154-221)||(19560398-19560465)
[»] chr7 (1 HSPs)
chr7 (161-199)||(40702779-40702817)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 8209922 - 8209683
Alignment:
Q  13 aatatgtaatataagttaaacagtttcttaaaaaccttttgattatagtgcggggacgctggttcaatttcccacaggaacagttgagcaggactcgaac 112  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||    
T  8209922 aatatgtaatataagttaaacagtttcgtgaaaaccttttgattatagtgtggggacgctggttcaattccccacaggaacaattgagcaggactcgaac 8209823  T
Q  113 atgcaacttttcactgaaagctcgaccctccttccattgcaaccaagagaaaattgtgatatatctatgcctaatatcatatatataacaaacttgggag 212  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8209822 atgcaacttttcactaaaagctcgaccctccttccattgcaaccaagagaaaattgtgatatatctatgcctaatatcatatatataacaaacttggaag 8209723  T
Q  213 atgccatggatctcatggatcctcaagaaaatccgccttt 252  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  8209722 atgccatggctctcatggatccccaagaaaatccgccttt 8209683  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 6655694 - 6655594
Alignment:
Q  121 tttcactgaaagctcgaccctccttccattgcaaccaagagaaaattgtgatatatctatgcctaatatcatatatataacaaacttgggagatgccatg 220  Q
    ||||| |||||| ||||| | |||  || ||||||||||||||| |||| ||| | ||||||||||||||||||||||||||| ||||||||| ||||||    
T  6655694 tttcagtgaaagttcgacacccctatcaatgcaaccaagagaaatttgtaatacaactatgcctaatatcatatatataacaatcttgggagaagccatg 6655595  T
Q  221 g 221  Q
    |    
T  6655594 g 6655594  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 16978081 - 16978000
Alignment:
Q  142 ccttccattgcaaccaagagaaaattgtgatatatctatgcctaatatcatata--tataacaaacttgggagatgccatgg 221  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||  |||| ||| |||||| ||||||||||    
T  16978081 ccttccattgcaaccaagggaaatttgtgatatatctatgcctaatatcatatatatatagcaatcttgggggatgccatgg 16978000  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 221
Target Start/End: Original strand, 33071656 - 33071777
Alignment:
Q  100 gcaggactcgaacatgcaacttttcactgaaagctcgaccctccttccattgcaaccaagagaaaattgtgatatatctatgcctaatatcatatatata 199  Q
    |||||||| |||| ||||   ||||| |||||| ||| | | ||| ||| |||||||||| |||| |||||||| |  ||||||||||||||||||||||    
T  33071656 gcaggacttgaacctgcacaatttcagtgaaagttcggcacccctaccagtgcaaccaagggaaatttgtgatacaattatgcctaatatcatatatata 33071755  T
Q  200 acaaacttgggagatgccatgg 221  Q
    ||||  ||||| ||||||||||    
T  33071756 acaatattgggggatgccatgg 33071777  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 44091070 - 44090991
Alignment:
Q  142 ccttccattgcaaccaagagaaaattgtgatatatctatgcctaatatcatatatataacaaacttgggagatgccatgg 221  Q
    |||||||||||||||||| |||| ||||||||| | |||||||||||||||||||||| ||| ||| || ||||||||||    
T  44091070 ccttccattgcaaccaagggaaatttgtgatatttttatgcctaatatcatatatatagcaatcttaggggatgccatgg 44090991  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 22891839 - 22891709
Alignment:
Q  98 gagcaggactcgaacatgcaacttttcactgaaagctcgaccctccttccattgcaaccaagagaaaattgtgatatatctatgcctaatatcatatata 197  Q
    ||||||||||| ||| ||  ||  ||| |||||||||||  |  |||||||||||||||||   ||| ||||||||||| ||||||||||||| ||| ||    
T  22891839 gagcaggactcaaacctgtgacaattcgctgaaagctcggtcacccttccattgcaaccaacgaaaatttgtgatatatttatgcctaatatcgtatgta 22891740  T
Q  198 taacaaacttgggagatgccatggatctcat 228  Q
    ||  |||  |||| |||| ||||| ||||||    
T  22891739 taggaaatctgggggatgtcatggctctcat 22891709  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 13714072 - 13713997
Alignment:
Q  146 ccattgcaaccaagagaaaattgtgatatatctatgcctaatatcatatatataacaaacttgggagatgccatgg 221  Q
    ||||||||||||||  ||| |||||||| |  |||||||||||||||||||||||||| |||||| ||||||||||    
T  13714072 ccattgcaaccaaggaaaatttgtgatacaattatgcctaatatcatatatataacaatcttgggggatgccatgg 13713997  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 32736819 - 32736740
Alignment:
Q  142 ccttccattgcaaccaagagaaaattgtgatatatctatgcctaatatcatatatataacaaacttgggagatgccatgg 221  Q
    |||||||||||||||||  ||||   ||||||||  ||||||||||||||||||||||  ||  ||||| ||||||||||    
T  32736819 ccttccattgcaaccaaaggaaacaagtgatataattatgcctaatatcatatatatagtaatattgggggatgccatgg 32736740  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 19560398 - 19560465
Alignment:
Q  154 accaagagaaaattgtgatatatctatgcctaatatcatatatataacaaacttgggagatgccatgg 221  Q
    |||||| |||| |||||||||| ||| |||||||||||||||||||  ||||||||| ||||||||||    
T  19560398 accaagtgaaacttgtgatataactaagcctaatatcatatatataggaaacttgggggatgccatgg 19560465  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 40702817 - 40702779
Alignment:
Q  161 gaaaattgtgatatatctatgcctaatatcatatatata 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  40702817 gaaatttgtgatatatctatgcctaatatcgtatatata 40702779  T

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