View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5148_high_18 (Length: 227)
Name: NF5148_high_18
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 39007073 - 39006850
Alignment:
| Q |
1 |
caagttccataagaactattcccatgctgaaaacatcacttttttctgttgaccgcagggagaatgcatgctctgcaagaaaaaaccaatgttaaacaag |
100 |
Q |
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| T |
39007073 |
caagttccataagaactattcccatgctgaaaacatcacttttttctgttgaccgcagggagaatgcatgctctgcaagaaaaaaccaatgttaaacaag |
39006974 |
T |
|
| Q |
101 |
ttttttcattagataaagttaaactaaaagtaatttcaaatcaattcaattcagcattttgatcaatacctggagccatgtagccataagaccctgcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39006973 |
ttttttcattagataaagttaaactaaaagtaatttcaaatcaattcaattcagcattttgatcaatacctggagccatgtagccataagaccctgcaaa |
39006874 |
T |
|
| Q |
201 |
acaagaatttgactcagtatttga |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39006873 |
acaagaatttgactcagtatttga |
39006850 |
T |
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