View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5148_high_6 (Length: 378)

Name: NF5148_high_6
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5148_high_6
NF5148_high_6
[»] chr1 (2 HSPs)
chr1 (120-307)||(22894351-22894538)
chr1 (1-42)||(22894567-22894608)
[»] chr8 (4 HSPs)
chr8 (120-307)||(16296587-16296774)
chr8 (120-307)||(16304289-16304476)
chr8 (5-42)||(16296853-16296890)
chr8 (5-42)||(16304555-16304592)
[»] chr3 (4 HSPs)
chr3 (120-307)||(2432649-2432836)
chr3 (201-307)||(14539819-14539925)
chr3 (1-42)||(2432567-2432609)
chr3 (287-315)||(43064307-43064335)
[»] chr5 (2 HSPs)
chr5 (287-315)||(39289015-39289043)
chr5 (287-315)||(39384293-39384321)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 120 - 307
Target Start/End: Complemental strand, 22894538 - 22894351
Alignment:
Q  120 attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac 219  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22894538 attcaattgggctttcaaaatcatgttgggccagataaggtccaacccgtatatatctgcccggtaacccgcacaacccggtaacccgaacccgaactac 22894439  T
Q  220 ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894438 ccgcttactagttttgggcacaattgggccagaggtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 22894351  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22894608 - 22894567
Alignment:
Q  1 ccagcaaatctatataaacgtggcagatggcctcatttttat 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22894608 ccagcaaatctatataaacgtggcagatggcctcatttttat 22894567  T

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Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 120 - 307
Target Start/End: Complemental strand, 16296774 - 16296587
Alignment:
Q  120 attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac 219  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  16296774 attcaattgggctttcaaaatcatattgggccagataaggtccaacccgtatatatccgcccgttaacccgcacaacccgataacccgaacccgaactac 16296675  T
Q  220 ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16296674 ccgcttactagttttgggcacaattgggccagaggtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 16296587  T

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Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 120 - 307
Target Start/End: Complemental strand, 16304476 - 16304289
Alignment:
Q  120 attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac 219  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  16304476 attcaattgggctttcaaaatcatattgggccagataaggtccaacccgtatatatccgcccgttaacccgcacaacccgataacccgaacccgaactac 16304377  T
Q  220 ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 307  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16304376 ccgcttactagttttgggcacaattgggccagaggtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 16304289  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 16296890 - 16296853
Alignment:
Q  5 caaatctatataaacgtggcagatggcctcatttttat 42  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16296890 caaatctatataaacgtggcagatgacctcatttttat 16296853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 16304592 - 16304555
Alignment:
Q  5 caaatctatataaacgtggcagatggcctcatttttat 42  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16304592 caaatctatataaacgtggcagatgacctcatttttat 16304555  T

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Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 120 - 307
Target Start/End: Original strand, 2432649 - 2432836
Alignment:
Q  120 attcaactgggctttcaaaatcatgttgggccagataaggtccaacccgtgtatatccgcccggtaacccgcacaacccggtaacccgaacccgaactac 219  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||  ||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  2432649 attcaattgggctttcaatatcatgttgggccagataaggtccaacatgtaaatatccgcccggtaacccgcgcaacccggtaacccgaacccgaactac 2432748  T
Q  220 ccgcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaacccgcccga 307  Q
    | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||    
T  2432749 ctgcttactagttttggccacaattgggccagaggtttgaacccttcgggttgggatgagcttccactttgggcccaaacccgtccga 2432836  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 14539819 - 14539925
Alignment:
Q  201 taacccgaacccgaactaccc-gcttactagttttgggcacaattgggccagatgtttgaacccttcgggttgggatgggctgccactttgggcccgaac 299  Q
    |||||||||| |||||||||| ||  || ||||||||||||||||| || |||||| || |||  | |||||||  |||| |||||||||||| ||||||    
T  14539819 taacccgaactcgaactaccccgcacaccagttttgggcacaattgtgcaagatgtctggacctgt-gggttggactgggttgccactttgggtccgaac 14539917  T
Q  300 ccgcccga 307  Q
    ||||||||    
T  14539918 ccgcccga 14539925  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2432567 - 2432609
Alignment:
Q  1 ccagcaaatctatataaacgtggcaga-tggcctcatttttat 42  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  2432567 ccagcaaatctatataaacgtggcagagaggcctcatttttat 2432609  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 43064335 - 43064307
Alignment:
Q  287 tttgggcccgaacccgcccgaacccgccc 315  Q
    |||||||||||||||||||||||||||||    
T  43064335 tttgggcccgaacccgcccgaacccgccc 43064307  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 39289043 - 39289015
Alignment:
Q  287 tttgggcccgaacccgcccgaacccgccc 315  Q
    |||||||||||||||||||||||||||||    
T  39289043 tttgggcccgaacccgcccgaacccgccc 39289015  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 39384293 - 39384321
Alignment:
Q  287 tttgggcccgaacccgcccgaacccgccc 315  Q
    |||||||||||||||||||||||||||||    
T  39384293 tttgggcccgaacccgcccgaacccgccc 39384321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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