View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5148_high_7 (Length: 377)

Name: NF5148_high_7
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5148_high_7
NF5148_high_7
[»] chr1 (5 HSPs)
chr1 (75-365)||(30871825-30872112)
chr1 (2-101)||(30871778-30871877)
chr1 (206-272)||(44973384-44973450)
chr1 (149-194)||(9873763-9873808)
chr1 (149-189)||(32827734-32827774)
[»] chr7 (2 HSPs)
chr7 (203-275)||(31756768-31756840)
chr7 (203-272)||(16862793-16862862)
[»] chr4 (8 HSPs)
chr4 (144-193)||(53979019-53979068)
chr4 (149-187)||(21027922-21027960)
chr4 (151-189)||(52450191-52450229)
chr4 (203-272)||(33648283-33648352)
chr4 (218-271)||(35946945-35946998)
chr4 (239-272)||(42096836-42096869)
chr4 (229-269)||(959084-959124)
chr4 (149-189)||(21326251-21326291)
[»] chr6 (2 HSPs)
chr6 (192-274)||(3644806-3644888)
chr6 (149-189)||(2725862-2725902)
[»] chr5 (3 HSPs)
chr5 (235-273)||(7599608-7599646)
chr5 (203-272)||(28218009-28218078)
chr5 (203-272)||(28228891-28228960)
[»] chr8 (2 HSPs)
chr8 (149-185)||(38006579-38006615)
chr8 (228-264)||(38006582-38006618)
[»] chr3 (1 HSPs)
chr3 (228-260)||(35310455-35310487)
[»] chr2 (1 HSPs)
chr2 (149-177)||(33833480-33833508)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 75 - 365
Target Start/End: Original strand, 30871825 - 30872112
Alignment:
Q  75 tggattcgatcggtcgagcttcatgtgaattcgatcgggttgagcttcatgtggatttaataggagaactgtttttctcccatctgtttttactcattcc 174  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  30871825 tggattcaatcggtcgagcttcatgtggattcgatcgggtcgagcttcatgtggatttaataggagaacggttcttctcccatctgtttttattcattcc 30871924  T
Q  175 tgttaaaatagccgaacgtattttcggtgtgagttaacttatacaggtgtattttttaacggggatgagcaaaaatagatgggagaagagtaattctcat 274  Q
     |||||||||| ||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  30871925 cgttaaaatagtcgagcgtattttcggcgtgagttaacttatacaggtgtatttttcaactgggatgagcaaaaacagatgggagaagagtaattctcat 30872024  T
Q  275 tcaatagcttgaaacaagtttgatggtcctccttctctaattatttgagtaatgttcggctcatattcatcatttacttttagatgatatt 365  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30872025 tcaatagcttgaaacaagtttgatgg---tccttctctaattatttgagtaatgttcggctcatattcgtcatttacttttagatgatatt 30872112  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 30871778 - 30871877
Alignment:
Q  2 gcttagttttgggaagttttggagggtgtggagttggcttgggtctatagatttgatcgggttaagcttcatgtggattcgatc-ggtcgagcttcatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| |||  |||||||||||||||||||| |||||||||||||||    
T  30871778 gcttagttttgggaagttttggagggtgtggagttggcttgggtctatggattcaatc-ggtcgagcttcatgtggattcgatcgggtcgagcttcatgt 30871876  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 44973384 - 44973450
Alignment:
Q  206 agttaacttatacaggtgtattttttaacggggatgagcaaaaatagatgggagaagagtaattctc 272  Q
    |||||||| || |||||||||||||||||  | || ||||||||||||||||||||||| |||||||    
T  44973384 agttaactcatgcaggtgtattttttaacatgaataagcaaaaatagatgggagaagagcaattctc 44973450  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 9873808 - 9873763
Alignment:
Q  149 ttctcccatctgtttttactcattcctgttaaaatagccgaacgta 194  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||    
T  9873808 ttctcccatctgtttttacttattcccgtcaaaatagccgaacgta 9873763  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 32827734 - 32827774
Alignment:
Q  149 ttctcccatctgtttttactcattcctgttaaaatagccga 189  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  32827734 ttctcccatctgtttttgctcattcctgtcaaaatagccga 32827774  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 31756840 - 31756768
Alignment:
Q  203 gtgagttaacttatacaggtgtattttttaacggggatgagcaaaaatagatgggagaagagtaattctcatt 275  Q
    ||||||||||| || ||||||||||||| |   || |||||||||||||||||||||||||| ||||||||||    
T  31756840 gtgagttaactcatgcaggtgtatttttcagtcggaatgagcaaaaatagatgggagaagagcaattctcatt 31756768  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 16862793 - 16862862
Alignment:
Q  203 gtgagttaacttatacaggtgtattttttaacggggatgagcaaaaatagatgggagaagagtaattctc 272  Q
    ||||||||||| |  ||||||||||| || | ||| ||||||||||| ||||||||||| || |||||||    
T  16862793 gtgagttaactcacgcaggtgtatttcttgatgggaatgagcaaaaacagatgggagaaaagcaattctc 16862862  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 53979019 - 53979068
Alignment:
Q  144 tgtttttctcccatctgtttttactcattcctgttaaaatagccgaacgt 193  Q
    |||| ||| ||||||||||||| ||||||||||||||||||| |||||||    
T  53979019 tgttcttcccccatctgtttttgctcattcctgttaaaatagtcgaacgt 53979068  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 21027960 - 21027922
Alignment:
Q  149 ttctcccatctgtttttactcattcctgttaaaatagcc 187  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  21027960 ttctcccatctgtttttgctcattcctgtcaaaatagcc 21027922  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 52450229 - 52450191
Alignment:
Q  151 ctcccatctgtttttactcattcctgttaaaatagccga 189  Q
    |||||||||||||||||||||||| || |||||||||||    
T  52450229 ctcccatctgtttttactcattcccgtcaaaatagccga 52450191  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 33648283 - 33648352
Alignment:
Q  203 gtgagttaacttatacaggtgtattttttaacggggatgagcaaaaatagatgggagaagagtaattctc 272  Q
    ||||||||||||   || |||||||||| | |||  |||||||||||||||||| ||||||| |||||||    
T  33648283 gtgagttaacttgcgcatgtgtatttttcagcggcaatgagcaaaaatagatggtagaagagcaattctc 33648352  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 35946998 - 35946945
Alignment:
Q  218 caggtgtattttttaacggggatgagcaaaaatagatgggagaagagtaattct 271  Q
    ||||||||||||| | | |||||||||||||  |||||||||||||| ||||||    
T  35946998 caggtgtatttttcagcagggatgagcaaaatcagatgggagaagagcaattct 35946945  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 42096836 - 42096869
Alignment:
Q  239 atgagcaaaaatagatgggagaagagtaattctc 272  Q
    |||||||||||||||||||||||||| |||||||    
T  42096836 atgagcaaaaatagatgggagaagagcaattctc 42096869  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 959124 - 959084
Alignment:
Q  229 tttaacggggatgagcaaaaatagatgggagaagagtaatt 269  Q
    ||||||||  |||||||||||||||||||||||||| ||||    
T  959124 tttaacggaaatgagcaaaaatagatgggagaagagcaatt 959084  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 21326251 - 21326291
Alignment:
Q  149 ttctcccatctgtttttactcattcctgttaaaatagccga 189  Q
    |||||||| |||||||| ||||||||||| |||||||||||    
T  21326251 ttctcccaactgttttttctcattcctgtcaaaatagccga 21326291  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 3644806 - 3644888
Alignment:
Q  192 gtattttcggtgtgagttaacttatacaggtgtattttttaacggggatgagcaaaaatagatgggagaagagtaattctcat 274  Q
    |||||||| ||||||||||||||| ||| || ||||| | | |||  ||||||||||  |||||||||||| | |||||||||    
T  3644806 gtattttcagtgtgagttaacttacacatgtctatttctcagcggaaatgagcaaaatcagatgggagaagtgcaattctcat 3644888  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 2725902 - 2725862
Alignment:
Q  149 ttctcccatctgtttttactcattcctgttaaaatagccga 189  Q
    ||||||||||||||||| |||||||| || |||||||||||    
T  2725902 ttctcccatctgtttttgctcattcccgtcaaaatagccga 2725862  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 7599646 - 7599608
Alignment:
Q  235 ggggatgagcaaaaatagatgggagaagagtaattctca 273  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  7599646 ggggatgagcaaaaatagatggaagaagagcaattctca 7599608  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 28218009 - 28218078
Alignment:
Q  203 gtgagttaacttatacaggtgtattttttaacggggatgagcaaaaatagatgggagaagagtaattctc 272  Q
    |||||||||||||  || |||||||| | ||||| |||||||||||| | |||| ||||||| |||||||    
T  28218009 gtgagttaacttacgcatgtgtatttctcaacggtgatgagcaaaaacatatggaagaagagcaattctc 28218078  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 28228891 - 28228960
Alignment:
Q  203 gtgagttaacttatacaggtgtattttttaacggggatgagcaaaaatagatgggagaagagtaattctc 272  Q
    |||||||||||||  || |||||||| | | ||| ||||| |||||| |||||||||||||| |||||||    
T  28228891 gtgagttaacttacgcatgtgtatttctcagcggagatgaacaaaaacagatgggagaagagcaattctc 28228960  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 38006615 - 38006579
Alignment:
Q  149 ttctcccatctgtttttactcattcctgttaaaatag 185  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  38006615 ttctcccatctgtttttgctcattcccgttaaaatag 38006579  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 38006582 - 38006618
Alignment:
Q  228 ttttaacggggatgagcaaaaatagatgggagaagag 264  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  38006582 ttttaacgggaatgagcaaaaacagatgggagaagag 38006618  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 260
Target Start/End: Original strand, 35310455 - 35310487
Alignment:
Q  228 ttttaacggggatgagcaaaaatagatgggaga 260  Q
    |||| ||||||||||||||||||||||||||||    
T  35310455 ttttgacggggatgagcaaaaatagatgggaga 35310487  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 33833508 - 33833480
Alignment:
Q  149 ttctcccatctgtttttactcattcctgt 177  Q
    |||||||||||||||||||||||||||||    
T  33833508 ttctcccatctgtttttactcattcctgt 33833480  T

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