View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5148_high_8 (Length: 367)
Name: NF5148_high_8
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 8209631 - 8209279
Alignment:
| Q |
1 |
atgcataagaagtgcgaccttattcagctcatgcgaggtttaaacgtgttcaaacccctcaaacttaacccgagatatggctagtatttcatgacgatcc |
100 |
Q |
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| T |
8209631 |
atgcataagaagtgtgaccttattcagctcatgcgaggtttaaacgtgttcaaacccctcaagcttaacccgagatatggctagtatttcatgacgatcc |
8209532 |
T |
|
| Q |
101 |
aaagagttcaatcaaaatccgtagttatccatagttaacttatgagctccatccatgttatgatatggatgttttaaatattttttggtagaatatgtaa |
200 |
Q |
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| T |
8209531 |
aaagagttcaatcaaaatccgtagttatccatagttaacttatgagctccatccatgttatgatatggatgttttaaatattttttggtagaatatgtaa |
8209432 |
T |
|
| Q |
201 |
tcttttaacactgcttacaaatagtttaatcaaaatcagtttatttaacactgtttcaaaagtcagtcgtaaggtagaagaaattatgaaaggttggtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8209431 |
tcttttaacactgcttacaaatagtttaatcaaaatcagtttatttaacactgtttcaaaagtcagtcgtaaggtagaagaaattatgaaaggttggtgg |
8209332 |
T |
|
| Q |
301 |
agattacggatcaaatgccagacaatattgtggcatcttatgggatggcagtg |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8209331 |
agattacggatcaaatgccagacaatattgtggcatcttatgggatggcagtg |
8209279 |
T |
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