View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5148_low_1 (Length: 504)
Name: NF5148_low_1
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 15740744 - 15741168
Alignment:
| Q |
10 |
ataatactactggaagaataaattggtctatcatctcnnnnnnnnctttctttctaattcatgattttgacaaccctactt-gatgacgtgataataaat |
108 |
Q |
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| T |
15740744 |
ataatactactggaagaataaattggtctattatctctttttt---ttttttactaattcatgattttgacaaccctactttgatgacgtgataataaat |
15740840 |
T |
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| Q |
109 |
tgttcactcttaacccctacctttttgattgatacgtttt-aactatgtatatttgaccactactcaatt-aacattttattttttaatactctcatcaa |
206 |
Q |
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||||||||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15740841 |
tgttcactcttaacccctatcattttgattgatacttttttaactatgtatatttgaccactactcaatttaacattttattttttaatactctcatcaa |
15740940 |
T |
|
| Q |
207 |
ttatgtcattcgctttcatgcgcctaataatatatcattatgtaatcaaattatttgatcaaaattatggagtgatcaattttannnnnnnnaaacatga |
306 |
Q |
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| T |
15740941 |
ttatgtcattcgctttcatgcgcctaataatatatcattatgtaatcaaattatttgatcaaaattatg-------cattttt--ttttttgaaacatga |
15741031 |
T |
|
| Q |
307 |
gactaatattgtacagctaaagatatggggacaaagttactagtgtggccaaacaaagggcagggtcgtatctgagacaggatgaggaggacgactgccc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
15741032 |
gactaatattgtacagctaaagatatggggacaaagttaccagtgtggccaaacaaagggcagggtcgtatctgagacaggacaaagaggacgactgccc |
15741131 |
T |
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| Q |
407 |
tagaccctaaaaagtaagtataaaatttaggcccaac |
443 |
Q |
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| T |
15741132 |
taggccctaaaaagtaagtacaaaatttaggcccaac |
15741168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Complemental strand, 5914152 - 5914101
Alignment:
| Q |
367 |
cagggtcgtatctgagacaggatgaggaggacgactgccctagaccctaaaa |
418 |
Q |
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| T |
5914152 |
cagggccgtatctgagacagggtgaggagggcgaccgccctagaccccaaaa |
5914101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 440
Target Start/End: Original strand, 7372529 - 7372602
Alignment:
| Q |
367 |
cagggtcgtatctgagacaggatgaggaggacgactgccctagaccctaaaaagtaagtataaaatttaggccc |
440 |
Q |
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| T |
7372529 |
cagggtcgtatctgaggtagggcgaagagggcgactgtcctaggccctaaaaaataagtacaaaatttgggccc |
7372602 |
T |
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