View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5148_low_12 (Length: 296)
Name: NF5148_low_12
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 30871504 - 30871776
Alignment:
| Q |
18 |
attatgtctaacttaaca-ttttaatatttttatcattgatcttgaacttgtggacggtattaaccattcttgattgtcttgctttgatttttaattaac |
116 |
Q |
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| T |
30871504 |
attatgtctaacttaacaattttaatatttttatcattgatcttgaacttgtggacggtattaaccattcttaattgtctggctttaatttttaattaac |
30871603 |
T |
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| Q |
117 |
atatttatgcggtatagtttatgtgtaaaagaattggaaccatatgtggataacgctatttgtttccacattattaaaactagcgtgcaagttattaaaa |
216 |
Q |
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| T |
30871604 |
atattcatgcggtatagtttatgtgtaaaagaattagaaccatatgtggataacgctatttgtttccacattattaaaactagcgtgcaagttattaaaa |
30871703 |
T |
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| Q |
217 |
taacatacaaattgataacgaatgattgtagttggtagttgaacatatccaaaatatttgggagtgatgatgt |
289 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
30871704 |
taacgtacaaattgataacgaatgattgtagttggttgttgaacatatccaaaatatttggtagtgatgatgt |
30871776 |
T |
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