View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5148_low_14 (Length: 271)
Name: NF5148_low_14
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 27 - 263
Target Start/End: Original strand, 30901403 - 30901640
Alignment:
| Q |
27 |
caaaagattctttaagcacaatatatcatcaactacgttaatttgttaataaataacttactcnnnnnnngaaagatagatagctttgtaaagctgtaag |
126 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30901403 |
caaaagtttctttaaacacaatatatcatcaactacgttaatttgttaataaataacttactctttttttgaaagatagatagctttgtaaagctgtaag |
30901502 |
T |
|
| Q |
127 |
aactaaga--nnnnnnnnnaggaaaggaactaagatgnnnnnnnnnattcattagtaaacaattattagttgagtctgtgactgcccttgtcgaatnnnn |
224 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30901503 |
aactaagatttttttttttaggaaaggaactaagatg-ttttttttattcattagtaaacaattattagttgagtctgtgactgcccttgtcgaataaaa |
30901601 |
T |
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| Q |
225 |
nnnnnctgagatcaagttctactctcacacattcttctc |
263 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30901602 |
aaaaactgagatcaagttctactctcacacattcttctc |
30901640 |
T |
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