View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5148_low_2 (Length: 425)
Name: NF5148_low_2
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 19240212 - 19240605
Alignment:
| Q |
16 |
ataaggggatatggggtgcaatgatttctggttatgtgcaaaatagttgctttaaggaaagtctttatttgtttcgtttgatgcagttgactgatatagt |
115 |
Q |
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| T |
19240212 |
ataaggggatatggggtgcaatgatttctggttatgtgcaaaatagttgctttaaggaaagtctttatttgtttcgtttgatgcagttgactgatatagt |
19240311 |
T |
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| Q |
116 |
tccagatgaatctatatttgtgagcattctttctgcttgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaag |
215 |
Q |
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| T |
19240312 |
accggatgagtctatatttgtgagtattctctctgcttgtgctcatctaggtgctttggaaattggtgtttggattcatcaacatttgaatcaattaaag |
19240411 |
T |
|
| Q |
216 |
ctagtaccattgagtgttcgtttgaatactagtttattagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattcaatgaaag |
315 |
Q |
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| T |
19240412 |
ctagtaccattgagtgttcgtttgagtactagtttattagatatgtacgctaaatgtgggaatttggaattggcgaaaagattattcgattcaatgaaca |
19240511 |
T |
|
| Q |
316 |
tgagagacgttgtatgttggaatgctatgatttctggtatggcaatgcatggagatgggaaaggtgcactcatgctgttttacgatatggaaaa |
409 |
Q |
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| T |
19240512 |
tgagagacgttgtatgttggaatgctatgatttctggtatggcaatgcatggagatgggaaaggtgccctcaagctgttttacgatatggaaaa |
19240605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 24 - 181
Target Start/End: Original strand, 19243251 - 19243405
Alignment:
| Q |
24 |
atatggggtgcaatgatttctggttatgtgcaaaatagttgctttaaggaaagtctttatttgtttcgtttgatgcagttgactgatatagttccagatg |
123 |
Q |
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| T |
19243251 |
atatggggtgcaatggtttctggttatgtgcaaaatagttgctttaaggaaagtctttatttgtttcgtttgatgcagttgactgatatagtacctgatg |
19243350 |
T |
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| Q |
124 |
aatctatatttgtgagcattctttctgcttgtgctcatctaggtgctttggatattgg |
181 |
Q |
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| T |
19243351 |
agtctatatttgtgag---taattctgcttgtgctcatctaggtgctttggatgttgg |
19243405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 19243434 - 19243479
Alignment:
| Q |
108 |
gatatagttccagatgaatctatatttgtgagcattctttctgctt |
153 |
Q |
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| T |
19243434 |
gatatagtaccggatgagtctatatttgtgagcattctttgtgctt |
19243479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 153 - 307
Target Start/End: Complemental strand, 32553236 - 32553092
Alignment:
| Q |
153 |
tgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcgtttgaatactagtttat |
252 |
Q |
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| T |
32553236 |
tgtgctcatctaggtgctttggatattggtgtttggatccatcgatgtttgaatcgaataaagctagtaacgttgactgttcgtttgaggactagttt-- |
32553139 |
T |
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| Q |
253 |
tagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattc |
307 |
Q |
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|| || ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
32553138 |
--------tacgctaaatgtgggaatttgaaattggcgaaaagattattcgattc |
32553092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 153 - 307
Target Start/End: Complemental strand, 39174058 - 39173914
Alignment:
| Q |
153 |
tgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcgtttgaatactagtttat |
252 |
Q |
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| T |
39174058 |
tgtgctcatctaggtgctttggatattggtgtttggatccatcgatgtttgaatcgaataaagctagtaacgttgactgttcgtttgaggactagttt-- |
39173961 |
T |
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| Q |
253 |
tagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattc |
307 |
Q |
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|| || ||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
39173960 |
--------tacgctaaatgtgggaatttgaaattggcgaaaagattattcgattc |
39173914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 35800259 - 35800327
Alignment:
| Q |
167 |
tgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcg |
235 |
Q |
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| T |
35800259 |
tgctttggatattggtgtttggatccatcgatgtttgaatcgaataaagctagtaacgttgattgttcg |
35800327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 23233012 - 23232915
Alignment:
| Q |
153 |
tgtgctcatctaggtgctttggatattggtgtttggattcatcgatatttgaatcgatcgaagctagtaccattgagtgttcgtttgaatactagttt |
250 |
Q |
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| T |
23233012 |
tgtgctcatctaggtgctttggatattggtgtttggatccatcgatgtttgaattgattaaagctagtaaagttgactgttcgtttgaggactagttt |
23232915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 23232887 - 23232823
Alignment:
| Q |
243 |
actagtttattagatatgtatgcaaaatgtgggaatttggaattggcgaaaagattatttgattc |
307 |
Q |
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| T |
23232887 |
actagtttattagatatgtacgctaaatgtgggaatttgaaattggcgaaaagattattcgattc |
23232823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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