View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5148_low_3 (Length: 420)
Name: NF5148_low_3
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5148_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 16297532 - 16297808
Alignment:
| Q |
11 |
acatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaatttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagataca |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297532 |
acatcatccaaagtaaattgcatcttgatgctttgagattcaaagcaaatttgcacatcaatagagagcaatggcaggcttaacaaaagctgcagataca |
16297631 |
T |
|
| Q |
111 |
aaaatagtaagccaatagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16297632 |
aaaatagtaagccaatagcataaaaatgttgaaaatattgataccaattcaaaccacaagactttgagcaaaaatacgtacatattatcaacaaatgaaa |
16297731 |
T |
|
| Q |
211 |
atcacaagctgctcaattttactcaaattaatcttctgattctgcataatcaaaattagatgatatcggtattcaac |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297732 |
atcacaagctgctcaattttactcaaattaatcttctggttctgcataatcaaaattagatgatatcggtattcaac |
16297808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 16305234 - 16305510
Alignment:
| Q |
11 |
acatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaatttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagataca |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16305234 |
acatcatccaaagtaaattgcatcttgatgctttgagattcaaagcaaatttgcacatcaatagagagcaatggcaggcttaacaaaagctgcatataca |
16305333 |
T |
|
| Q |
111 |
aaaatagtaagccaatagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
16305334 |
aaaatagtaagccaatagcataaaaatgttgaaaatattgataccaattcaaaccacaagactttgagtaaaaatacgtacatattatcaacaaatgaaa |
16305433 |
T |
|
| Q |
211 |
atcacaagctgctcaattttactcaaattaatcttctgattctgcataatcaaaattagatgatatcggtattcaac |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16305434 |
atcacaagctgctcaattttactcaaattaatcttctggttctgcataatcaaaattagatgatatcggtattcaac |
16305510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 16297861 - 16297922
Alignment:
| Q |
340 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccact |
401 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16297861 |
cacatactggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccact |
16297922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 16305563 - 16305624
Alignment:
| Q |
340 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccact |
401 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16305563 |
cacatacttgcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccact |
16305624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 22895019 - 22895295
Alignment:
| Q |
11 |
acatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaatttgcccatcaatagagagcaatggcaggcttaacaaaagctgcagataca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22895019 |
acatcatccaaagtaaagtgcatcttgatactttgagattcaaagcaaatttgcacatcaatagagagcaatggcaggcttaacaaaagctgcaaataca |
22895118 |
T |
|
| Q |
111 |
aaaatagtaagccaatagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22895119 |
aaaatagtaagccaatagcataaaaatgatgaaaatattgataccaattcaaaccacaagactttgaggaaaaatacctacatattatcaacaaatgaaa |
22895218 |
T |
|
| Q |
211 |
atcacaagctgctcaattttactcaaattaatcttctgattctgcataatcaaaattagatgatatcggtattcaac |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22895219 |
atcacaagctgctcaattttactcaaattaatcttctggttctgcataatcaaaattagatgatatcggtattcaac |
22895295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 133 - 277
Target Start/End: Original strand, 15976019 - 15976163
Alignment:
| Q |
133 |
aaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaacaaatgaaaatcacaagctgctcaattttac |
232 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||||| || ||||||||||||||||| | || |||||||||| |||||||||||||||||| || || |
|
|
| T |
15976019 |
aaaatggtgaaaatattgaatcaaattcaaaccacaagacattgagcaaaaatacctatgtgttttcaacaaatgcaaatcacaagctgctcaaattcac |
15976118 |
T |
|
| Q |
233 |
tcaaattaatcttctgattctgcataatcaaaattagatgatatc |
277 |
Q |
| |
|
| |||| || ||| || |||||||||||||||| ||||||||||| |
|
|
| T |
15976119 |
tgaaatcaaacttatggttctgcataatcaaaactagatgatatc |
15976163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 22895348 - 22895409
Alignment:
| Q |
340 |
cacatgctggcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccact |
401 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22895348 |
cacatactagcctcaaaaccaacacaatactcacgctgctaccagcaacaaacagacccact |
22895409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 3873804 - 3874009
Alignment:
| Q |
11 |
acatcatccaaagtaaagtgcatcttgatgctttgagattcaaagcaaatttgc---------ccatcaatagagagcaatggcaggcttaacaaaagct |
101 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||| ||||||||||||||||||| |||| ||||| | || ||||| |||||| |||||| |
|
|
| T |
3873804 |
acatcatccaaagtaaaatggatcatgatgctttaagattcaaagcaaatttgcaacttaacatcatccatagacaacattggcatgcttaattaaagct |
3873903 |
T |
|
| Q |
102 |
gcagatacaaaaatagtaagccaatagcataaaaatgatgaaaatattgataccaattcaaaccacaaaactttgagcaaaaatacctacatattatcaa |
201 |
Q |
| |
|
|||||| |||||| |||| ||| | ||| |||| | |||||||||||| | | |||||||||||| || |||||||| |||||||| |||| |||| |
|
|
| T |
3873904 |
gcagatgcaaaaacggtaaaccacaaacatgaaaacggtgaaaatattgaatcaatttcaaaccacaagacattgagcaagaatacctatgtattttcaa |
3874003 |
T |
|
| Q |
202 |
caaatg |
207 |
Q |
| |
|
|||||| |
|
|
| T |
3874004 |
caaatg |
3874009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University