View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5148_low_4 (Length: 387)

Name: NF5148_low_4
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5148_low_4
NF5148_low_4
[»] chr8 (5 HSPs)
chr8 (1-369)||(34743535-34743900)
chr8 (74-161)||(10773184-10773271)
chr8 (246-290)||(12503301-12503345)
chr8 (1-36)||(10773307-10773342)
chr8 (234-290)||(34743184-34743240)
[»] chr5 (4 HSPs)
chr5 (21-202)||(25760218-25760398)
chr5 (102-172)||(25803636-25803706)
chr5 (263-292)||(38299926-38299955)
chr5 (246-290)||(15238975-15239019)
[»] scaffold0005 (1 HSPs)
scaffold0005 (74-197)||(269287-269410)
[»] scaffold0085 (1 HSPs)
scaffold0085 (74-202)||(47014-47142)
[»] chr2 (3 HSPs)
chr2 (96-201)||(19984284-19984389)
chr2 (94-203)||(12965270-12965378)
chr2 (263-293)||(37828443-37828473)
[»] chr1 (1 HSPs)
chr1 (259-292)||(42175309-42175342)
[»] chr3 (4 HSPs)
chr3 (259-291)||(25858059-25858091)
chr3 (246-290)||(1885127-1885171)
chr3 (246-290)||(30528337-30528381)
chr3 (263-299)||(38421390-38421426)
[»] scaffold0097 (1 HSPs)
scaffold0097 (249-290)||(48082-48123)
[»] chr4 (1 HSPs)
chr4 (261-290)||(52073270-52073299)
[»] chr7 (4 HSPs)
chr7 (263-291)||(1505542-1505570)
chr7 (264-292)||(23475762-23475790)
chr7 (264-292)||(23534175-23534203)
chr7 (259-295)||(33859474-33859510)
[»] chr6 (3 HSPs)
chr6 (259-295)||(25562580-25562616)
chr6 (259-295)||(26002031-26002067)
chr6 (263-295)||(26102096-26102128)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 34743535 - 34743900
Alignment:
Q  1 tgatccctttgttttggttcgtattccctgagcatcgtaattacaacaacatttttttccttatannnnnnnnaataatttcatattactttctgaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||        ||||||||||||||||||| |||||||    
T  34743535 tgatccctttgttttggttcgtattccctgagcatcgtaattacaaca---tttttttccttatattttttttaataatttcatattactttttgaaatt 34743631  T
Q  101 tgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaacaaggaaaaagaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743632 tgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaacaaggaaaaagaaat 34743731  T
Q  201 aatcgtagaagatgagtcttaactgacacgggatattttggactgttcagttggaatggagtgttttttgttgggagaagagcaattttccacaacaaat 300  Q
    |||||||||||||||||||||||| ||||||| |||||||| | ||||||||| || ||||  ||||||| |||||||||||||||||||||||||||||    
T  34743732 aatcgtagaagatgagtcttaacttacacggggtattttgggcagttcagttgaaagggagcattttttgctgggagaagagcaattttccacaacaaat 34743831  T
Q  301 tgcatccaacttatagttataacccgaacctacaaccatttgttgcatatatttgatggatgttgattg 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  34743832 tgcatccaacttatagttatagcccgaacctacaaccatttgttgcatatatttgatggattttgattg 34743900  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 10773271 - 10773184
Alignment:
Q  74 aataatttcatattactttctgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgc 161  Q
    |||||||||||| |||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  10773271 aataatttcatagtactttttgaaatatgaatcgaaggttcctatggaggagacgccataaatcaatgcgttgtttattcaagtttgc 10773184  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 12503345 - 12503301
Alignment:
Q  246 ttcagttggaatggagtgttttttgttgggagaagagcaattttc 290  Q
    ||||||||| | |||||||||||||||||||||||||||||||||    
T  12503345 ttcagttgggagggagtgttttttgttgggagaagagcaattttc 12503301  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10773342 - 10773307
Alignment:
Q  1 tgatccctttgttttggttcgtattccctgagcatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  10773342 tgatccctttgttttggttcgtattccctgagcatc 10773307  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 34743240 - 34743184
Alignment:
Q  234 tattttggactgttcagttggaatggagtgttttttgttgggagaagagcaattttc 290  Q
    |||||||||| |||||||||| | ||||  ||||||||||||||||||||| |||||    
T  34743240 tattttggacagttcagttgggagggagcattttttgttgggagaagagcatttttc 34743184  T

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Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 25760218 - 25760398
Alignment:
Q  21 gtattccctgagcatcgtaattacaacaacatttttttccttatannnnnnnnaataatttcatattactttctgaaatttgaatcgaaggttcctatgg 120  Q
    ||||||| || ||||||||||||||||||||| |||| |||| ||        |||||||||||||| |||| |||||||||||||||||||| ||||||    
T  25760218 gtattccatgtgcatcgtaattacaacaacatctttt-ccttctattttttttaataatttcatatttctttttgaaatttgaatcgaaggtttctatgg 25760316  T
Q  121 aggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaacaaggaaaaagaaataa 202  Q
    ||||||| |||||||||  ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  25760317 aggaaacaccataaatcgatgccttgtttattcaagtttgctttcaataccaggcttcaaaggaacaaggaaaaagaaataa 25760398  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 25803706 - 25803636
Alignment:
Q  102 gaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatca 172  Q
    |||||||||||| ||||||||||||| |||||||||  ||| ||||||| |||||||||||||||||||||    
T  25803706 gaatcgaaggtttctatggaggaaacaccataaatcgatgccttgtttaatcaagtttgctttcaatatca 25803636  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 38299926 - 38299955
Alignment:
Q  263 gttttttgttgggagaagagcaattttcca 292  Q
    ||||||||||||||||||||||||||||||    
T  38299926 gttttttgttgggagaagagcaattttcca 38299955  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 15238975 - 15239019
Alignment:
Q  246 ttcagttggaatggagtgttttttgttgggagaagagcaattttc 290  Q
    ||||||||| |  ||| ||||||||||||||||||||||||||||    
T  15238975 ttcagttgggagtgagcgttttttgttgggagaagagcaattttc 15239019  T

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Target: scaffold0005 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 74 - 197
Target Start/End: Complemental strand, 269410 - 269287
Alignment:
Q  74 aataatttcatattactttctgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcag 173  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||| ||||||||     
T  269410 aataatttcatatttctttttgaaatttgaatcgaaggttcctatggaggaaacaccataaatcggtgccttttttattcaagtttgcttccaatatcaa 269311  T
Q  174 acttcaaaggaacaaggaaaaaga 197  Q
     |||||||||||||||||||||||    
T  269310 gcttcaaaggaacaaggaaaaaga 269287  T

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Target: scaffold0085 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 47014 - 47142
Alignment:
Q  74 aataatttcatattactttctgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcag 173  Q
    |||||||||||||| |||| |||||||||||||||||||| | |||||| |||| |||||||||  | | |||||||||||||||||||||||||| |||    
T  47014 aataatttcatatttctttttgaaatttgaatcgaaggtttcgatggagaaaacaccataaatcgataccttgtttattcaagtttgctttcaataccag 47113  T
Q  174 acttcaaaggaacaaggaaaaagaaataa 202  Q
     ||||||||||||||||||||||||||||    
T  47114 gcttcaaaggaacaaggaaaaagaaataa 47142  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 19984389 - 19984284
Alignment:
Q  96 aaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaacaaggaaaaa 195  Q
    |||||||||||||||||| ||||||||||||| |||||||||  ||| ||||||||||||||||||||| ||||  || |||||||||||||||||||||    
T  19984389 aaatttgaatcgaaggtttctatggaggaaacaccataaatcgatgccttgtttattcaagtttgcttttaatactaggcttcaaaggaacaaggaaaaa 19984290  T
Q  196 gaaata 201  Q
    ||||||    
T  19984289 gaaata 19984284  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 12965378 - 12965270
Alignment:
Q  94 tgaaatttgaatcgaaggttcctatggaggaaacgccataaatcagtgcgttgtttattcaagtttgctttcaatatcagacttcaaaggaacaaggaaa 193  Q
    ||||||||||||||||||||| || | ||||||| ||||| |||  ||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  12965378 tgaaatttgaatcgaaggttc-taggaaggaaacaccatagatcgatgccttgtttattcaagtttgatttcaatatcaggcttcaaaggaataaggaaa 12965280  T
Q  194 aagaaataat 203  Q
    ||||||||||    
T  12965279 aagaaataat 12965270  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 293
Target Start/End: Complemental strand, 37828473 - 37828443
Alignment:
Q  263 gttttttgttgggagaagagcaattttccac 293  Q
    |||||||||||||||||||||||||||||||    
T  37828473 gttttttgttgggagaagagcaattttccac 37828443  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 42175309 - 42175342
Alignment:
Q  259 gagtgttttttgttgggagaagagcaattttcca 292  Q
    ||||||||||||||||||||||||||||||||||    
T  42175309 gagtgttttttgttgggagaagagcaattttcca 42175342  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 25858059 - 25858091
Alignment:
Q  259 gagtgttttttgttgggagaagagcaattttcc 291  Q
    |||||||||||||||||||||||||||||||||    
T  25858059 gagtgttttttgttgggagaagagcaattttcc 25858091  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 1885171 - 1885127
Alignment:
Q  246 ttcagttggaatggagtgttttttgttgggagaagagcaattttc 290  Q
    ||||||||| | ||||||||||||| ||||||||||||| |||||    
T  1885171 ttcagttgggagggagtgttttttgatgggagaagagcatttttc 1885127  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 30528381 - 30528337
Alignment:
Q  246 ttcagttggaatggagtgttttttgttgggagaagagcaattttc 290  Q
    ||||||||| |  ||||||||||||||||||||| ||||||||||    
T  30528381 ttcagttggtagtgagtgttttttgttgggagaaaagcaattttc 30528337  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 38421390 - 38421426
Alignment:
Q  263 gttttttgttgggagaagagcaattttccacaacaaa 299  Q
    |||||||||||||||||||||||||||| | ||||||    
T  38421390 gttttttgttgggagaagagcaattttctaaaacaaa 38421426  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 48082 - 48123
Alignment:
Q  249 agttggaatggagtgttttttgttgggagaagagcaattttc 290  Q
    |||||| ||| |||||||||||||||||||| ||||||||||    
T  48082 agttgggatgaagtgttttttgttgggagaatagcaattttc 48123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Complemental strand, 52073299 - 52073270
Alignment:
Q  261 gtgttttttgttgggagaagagcaattttc 290  Q
    ||||||||||||||||||||||||||||||    
T  52073299 gtgttttttgttgggagaagagcaattttc 52073270  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 291
Target Start/End: Complemental strand, 1505570 - 1505542
Alignment:
Q  263 gttttttgttgggagaagagcaattttcc 291  Q
    |||||||||||||||||||||||||||||    
T  1505570 gttttttgttgggagaagagcaattttcc 1505542  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 23475762 - 23475790
Alignment:
Q  264 ttttttgttgggagaagagcaattttcca 292  Q
    |||||||||||||||||||||||||||||    
T  23475762 ttttttgttgggagaagagcaattttcca 23475790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 23534175 - 23534203
Alignment:
Q  264 ttttttgttgggagaagagcaattttcca 292  Q
    |||||||||||||||||||||||||||||    
T  23534175 ttttttgttgggagaagagcaattttcca 23534203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 33859474 - 33859510
Alignment:
Q  259 gagtgttttttgttgggagaagagcaattttccacaa 295  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  33859474 gagtggtttttgttgggagaagagcaattttcaacaa 33859510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 25562580 - 25562616
Alignment:
Q  259 gagtgttttttgttgggagaagagcaattttccacaa 295  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  25562580 gagtggtttttgttgggagaagagcaattttcaacaa 25562616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 26002031 - 26002067
Alignment:
Q  259 gagtgttttttgttgggagaagagcaattttccacaa 295  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  26002031 gagtggtttttgttgggagaagagcaattttcaacaa 26002067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 26102096 - 26102128
Alignment:
Q  263 gttttttgttgggagaagagcaattttccacaa 295  Q
    |||||||||||||||||||||||||||| ||||    
T  26102096 gttttttgttgggagaagagcaattttcaacaa 26102128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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