View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5148_low_5 (Length: 387)

Name: NF5148_low_5
Description: NF5148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5148_low_5
NF5148_low_5
[»] chr6 (2 HSPs)
chr6 (79-380)||(11274291-11274590)
chr6 (312-376)||(12174286-12174350)
[»] chr8 (7 HSPs)
chr8 (149-380)||(12181626-12181857)
chr8 (149-380)||(12426054-12426285)
chr8 (79-165)||(12181527-12181613)
chr8 (79-165)||(12425955-12426041)
chr8 (324-380)||(13580453-13580509)
chr8 (324-380)||(32646672-32646728)
chr8 (324-368)||(38075793-38075836)
[»] chr3 (6 HSPs)
chr3 (107-312)||(17712341-17712546)
chr3 (107-312)||(19013598-19013803)
chr3 (304-380)||(17713234-17713310)
chr3 (304-380)||(19014463-19014539)
chr3 (341-375)||(33510197-33510231)
chr3 (343-376)||(27541167-27541200)
[»] chr1 (2 HSPs)
chr1 (310-380)||(35204310-35204380)
chr1 (347-376)||(29664192-29664221)
[»] chr7 (4 HSPs)
chr7 (344-380)||(26914438-26914474)
chr7 (344-380)||(31329682-31329718)
chr7 (326-376)||(35812594-35812644)
chr7 (343-373)||(36066110-36066140)
[»] chr5 (2 HSPs)
chr5 (344-380)||(3597007-3597043)
chr5 (343-379)||(32257781-32257817)
[»] chr4 (1 HSPs)
chr4 (343-376)||(12167047-12167080)
[»] chr2 (1 HSPs)
chr2 (343-376)||(5163789-5163822)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 79 - 380
Target Start/End: Original strand, 11274291 - 11274590
Alignment:
Q  79 caaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctttaacaacaaaagaa 178  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11274291 caaagttgaagagtttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttgtctttaacaacaaaagaa 11274390  T
Q  179 tcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtccgcatctagtatattatatgat 278  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11274391 tcaatacctttaaaa-atgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtccgcatctagtatattatatgat 11274489  T
Q  279 tttggcagggtcgacctaagtatgattgagagagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtatt 378  Q
    | | ||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  11274490 tgtcgcagggtcgccctaagtatgattgagtgagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttactt-gtaattagtgtt 11274588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 12174286 - 12174350
Alignment:
Q  312 gcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagta 376  Q
    |||||||| || | ||||||||| | | || || |||||||||||||||||||||||| ||||||    
T  12174286 gcagtaacctagggcaccattttttaagaggcaccaaaattattatttttacttagtagttagta 12174350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 149 - 380
Target Start/End: Original strand, 12181626 - 12181857
Alignment:
Q  149 tattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgt 248  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12181626 tattagagtttttctttaacaacaaaagaatcaatatctttaaaaaatgaagaataaatatattcacgactaagttcacatgcaaggatgaagcacatgt 12181725  T
Q  249 gagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattgagagagcagtaacttaagacaccattttcttaaagacatcaa 348  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||| |||||||||| ||    
T  12181726 gagtagtccgcatctagtatattatatgattttggcagggtcgccctaagtatggttgggagagcagcaacttaagacaccattttattaaagacattaa 12181825  T
Q  349 aattattatttttacttagtaattagtattat 380  Q
    ||||||||||||||||||||||||||||||||    
T  12181826 aattattatttttacttagtaattagtattat 12181857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 149 - 380
Target Start/End: Original strand, 12426054 - 12426285
Alignment:
Q  149 tattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaatatattcacgactaaattcacatgcaaggatgaagcacatgt 248  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12426054 tattagagtttttctttaacaacaaaagaatcaatatctttaaaaaatgaagaataaatatattcacgactaagttcacatgcaaggatgaagcacatgt 12426153  T
Q  249 gagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattgagagagcagtaacttaagacaccattttcttaaagacatcaa 348  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||| |||||||||| ||    
T  12426154 gagtagtccgcatctagtatattatatgattttggcagggtcgccctaagtatggttgggagagcagcaacttaagacaccattttattaaagacattaa 12426253  T
Q  349 aattattatttttacttagtaattagtattat 380  Q
    ||||||||||||||||||||||||||||||||    
T  12426254 aattattatttttacttagtaattagtattat 12426285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 12181527 - 12181613
Alignment:
Q  79 caaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttcttt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12181527 caaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgagaacatttttaatgttattagagtttttcttt 12181613  T

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Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 12425955 - 12426041
Alignment:
Q  79 caaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttcttt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12425955 caaagttgaagagcttgacaaaagaaagcgatcatttaatttatcaactagatgagaacatttttaatgttattagagtttttcttt 12426041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 13580509 - 13580453
Alignment:
Q  324 gacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 380  Q
    ||||||||||| |||  | || ||||||||||||||||||||| || ||||||||||    
T  13580509 gacaccatttttttaggggcaccaaaattattatttttacttaatagttagtattat 13580453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 32646728 - 32646672
Alignment:
Q  324 gacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 380  Q
    ||||||||||| |||||||||  |||||||||||||||| | |||| | ||||||||    
T  32646728 gacaccatttttttaaagacactaaaattattatttttattcagtagtgagtattat 32646672  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 38075836 - 38075793
Alignment:
Q  324 gacaccattttcttaaagacatcaaaattattatttttacttagt 368  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||    
T  38075836 gacaccatttt-ttagggacatcaaaattattatttttacttagt 38075793  T

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Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 107 - 312
Target Start/End: Original strand, 17712341 - 17712546
Alignment:
Q  107 cgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17712341 cgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctataacaacaaaagaatcaatacctttaaaaaatgaagaatcaa 17712440  T
Q  207 tatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattg 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17712441 tatattcacgactaaattcacatgcaaggatgaaggacatgtgagcagtccgcatctagtatattatatgattttggcagggtcgccctaagtatgattg 17712540  T
Q  307 agagag 312  Q
    ||||||    
T  17712541 agagag 17712546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 107 - 312
Target Start/End: Original strand, 19013598 - 19013803
Alignment:
Q  107 cgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctttaacaacaaaagaatcaatacctttaaaaaatgaagaatcaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19013598 cgatcatttaatttatcaactagatgtgaacatttttaatgttattagagtttttctataacaacaaaagaatcaatacctttaaaaaatgaagaatcaa 19013697  T
Q  207 tatattcacgactaaattcacatgcaaggatgaagcacatgtgagtagtccgcatctagtatattatatgattttggcagggtcgacctaagtatgattg 306  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19013698 tatattcacgactaaattcacatgcaaggatgaaggacatgtgagcagtccgcatctagtatattatatgattttggcagggtcgccctaagtatgattg 19013797  T
Q  307 agagag 312  Q
    ||||||    
T  19013798 agagag 19013803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 17713234 - 17713310
Alignment:
Q  304 ttgagagagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 380  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17713234 ttgagagagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttat 17713310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 304 - 380
Target Start/End: Original strand, 19014463 - 19014539
Alignment:
Q  304 ttgagagagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 380  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19014463 ttgagagagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagttttat 19014539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 375
Target Start/End: Complemental strand, 33510231 - 33510197
Alignment:
Q  341 gacatcaaaattattatttttacttagtaattagt 375  Q
    ||||||||||||||||||||||||||||| |||||    
T  33510231 gacatcaaaattattatttttacttagtagttagt 33510197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 27541200 - 27541167
Alignment:
Q  343 catcaaaattattatttttacttagtaattagta 376  Q
    |||||||||||||||||||| |||||||||||||    
T  27541200 catcaaaattattatttttatttagtaattagta 27541167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 35204380 - 35204310
Alignment:
Q  310 gagcagtaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 380  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35204380 gagcagcaacttaagacaccattttcttaaagacatcaaaattattatttttacttagtaattagtattat 35204310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 376
Target Start/End: Original strand, 29664192 - 29664221
Alignment:
Q  347 aaaattattatttttacttagtaattagta 376  Q
    ||||||||||||||||||||||||||||||    
T  29664192 aaaattattatttttacttagtaattagta 29664221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 26914474 - 26914438
Alignment:
Q  344 atcaaaattattatttttacttagtaattagtattat 380  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26914474 atcaaaattattatttttacttagtagttagtattat 26914438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 31329718 - 31329682
Alignment:
Q  344 atcaaaattattatttttacttagtaattagtattat 380  Q
    |||||||||||||||||||||| ||||||||||||||    
T  31329718 atcaaaattattatttttacttcgtaattagtattat 31329682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 35812594 - 35812644
Alignment:
Q  326 caccattttcttaaagacatcaaaattattatttttacttagtaattagta 376  Q
    ||||||||| |||  | |||||||||||||||||||||||| |||||||||    
T  35812594 caccatttttttaggggcatcaaaattattatttttacttaataattagta 35812644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 373
Target Start/End: Original strand, 36066110 - 36066140
Alignment:
Q  343 catcaaaattattatttttacttagtaatta 373  Q
    |||||||||||||||||||||||||||||||    
T  36066110 catcaaaattattatttttacttagtaatta 36066140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 3597043 - 3597007
Alignment:
Q  344 atcaaaattattatttttacttagtaattagtattat 380  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3597043 atcaaaattattatttttatttagtaattagtattat 3597007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 32257817 - 32257781
Alignment:
Q  343 catcaaaattattatttttacttagtaattagtatta 379  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  32257817 catcaaaataattatttttacttagtagttagtatta 32257781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 12167047 - 12167080
Alignment:
Q  343 catcaaaattattatttttacttagtaattagta 376  Q
    ||||||||||||||||||| ||||||||||||||    
T  12167047 catcaaaattattatttttgcttagtaattagta 12167080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 5163789 - 5163822
Alignment:
Q  343 catcaaaattattatttttacttagtaattagta 376  Q
    ||||||||||||||||||||||||||| ||||||    
T  5163789 catcaaaattattatttttacttagtagttagta 5163822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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