View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5149-Insertion-3 (Length: 828)

Name: NF5149-Insertion-3
Description: NF5149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5149-Insertion-3
NF5149-Insertion-3
[»] chr1 (3 HSPs)
chr1 (15-756)||(10032833-10033573)
chr1 (755-828)||(10034274-10034347)
chr1 (755-827)||(10020609-10020679)
[»] chr4 (2 HSPs)
chr4 (146-624)||(41067757-41068233)
chr4 (625-660)||(41067694-41067729)
[»] chr3 (4 HSPs)
chr3 (162-624)||(8479391-8479851)
chr3 (660-756)||(2899284-2899380)
chr3 (188-362)||(10996811-10996984)
chr3 (626-660)||(8479322-8479356)
[»] chr5 (4 HSPs)
chr5 (162-624)||(19936349-19936809)
chr5 (15-79)||(29924688-29924752)
chr5 (78-131)||(29924242-29924295)
chr5 (625-660)||(19936843-19936878)
[»] scaffold0911 (1 HSPs)
scaffold0911 (147-346)||(2738-2934)
[»] chr6 (1 HSPs)
chr6 (15-118)||(15952720-15952823)
[»] scaffold0196 (1 HSPs)
scaffold0196 (146-274)||(224-352)
[»] chr2 (3 HSPs)
chr2 (660-750)||(32235006-32235096)
chr2 (15-79)||(1636685-1636749)
chr2 (660-709)||(30418630-30418679)
[»] chr8 (1 HSPs)
chr8 (151-352)||(26657175-26657379)


Alignment Details
Target: chr1 (Bit Score: 672; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 15 - 756
Target Start/End: Original strand, 10032833 - 10033573
Alignment:
Q  15 ttccatacttttgtaaactgaacaaaacgacaacgcaagcaatagaaatcatcaccacttcatcttgttgaattgcatctaccccaaccttcaagccgtt 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032833 ttccatacttttgtaaactgaacaaaacgacaaggcaagcaatagaaatcatcaccacttcatcttgttgaattgcatctaccccaaccttcaagccgtt 10032932  T
Q  115 aacagatgatagtactgacattgctatac-gcggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaag 213  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10032933 aacaaatgatagtactgacattgctataccgcggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaag 10033032  T
Q  214 ctttccctaaaacatgctttttcaatgtttgctgctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  10033033 ctttccctaaaacatgctttttcaatgtttgctgctgttttttagataaaacttgcgtgaatccttcgcttgccatacgttgatcatactcccgaatgtg 10033132  T
Q  314 agcccataaatccaagtcattttgcacatttttcaaaacctggatttccctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagct 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033133 agcccataaatccaagtcattttgcacatttttcaaaacctggatttccctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagct 10033232  T
Q  414 gctgttcttgaattcgcttatgtctctgttggtctggattgcacatttgttgaatgttccaatgccataacacctaatgatgtctgctatgatgtgatac 513  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  10033233 gctgttcttgaattcgcttatgtttctgttgatctggattgcacatttgttgaatgttccaatgccataacatctaatgatgtctgc--tgatgtgatac 10033330  T
Q  514 gacagtgtccccgcttacattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattg 613  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033331 gacagtgtccccacttacattttcctgtggagttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattg 10033430  T
Q  614 ataccgatgtccgctttgtccatttgcaagtctgtctgcacttcatcaatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaa 713  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  10033431 atactgatgtccgctttgtccaattgcaagtctgtctgcacttcatcaatctgaagttgcctcttgacttgttgctgctgtttcttagataaaaccggaa 10033530  T
Q  714 caaaaggagcggctgcattttctttatcataagcacgaatacg 756  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10033531 caaaaggagcggctgcattttctttatcataagcacgaatacg 10033573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 755 - 828
Target Start/End: Original strand, 10034274 - 10034347
Alignment:
Q  755 cgtactttcttacacacgaggcacattttctgatactctaagcctttttcaaaccacccttattgttatgttaa 828  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10034274 cgtactttcttacacacgaggcacattttctggtactctaagcctttttcaaaccacccttattgttatgttaa 10034347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 755 - 827
Target Start/End: Original strand, 10020609 - 10020679
Alignment:
Q  755 cgtactttcttacacacgaggcacattttctgatactctaagcctttttcaaaccacccttattgttatgtta 827  Q
    |||||||||||||||||||||||||||| ||| |||||||||  | |||||| ||||||||||||||||||||    
T  10020609 cgtactttcttacacacgaggcacatttgctggtactctaag--tctttcaagccacccttattgttatgtta 10020679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 146 - 624
Target Start/End: Complemental strand, 41068233 - 41067757
Alignment:
Q  146 ggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  41068233 ggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgc 41068134  T
Q  246 tgctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttt 345  Q
    |||||||||||||| ||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  41068133 tgctgttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcttactcccgaatgcgagcccataaatccaagtcattttgaacatttt 41068034  T
Q  346 tcaaaacctggatttccctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttgg 445  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| |||| |||||||| |||    
T  41068033 tcgaaacctggatttccttggactgaattgaaacttcacgcacctgatcagcagtaaactcattagctgctgcacttgaattagcttctgtctctgctgg 41067934  T
Q  446 tctggattgcacatttgttgaatgttccaatgccataacacctaatgatgtctgctatgatgtgatacgacagtgtccccgcttacattttcctgtggag 545  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||||| || |  |||||||| ||| || |||| || |||||||||||||||||||    
T  41067933 tctggattgcacattagctgaatgttccaatgccataacatctaatgatggctac--tgatgtgaaacggcattgtcaccacttacattttcctgtggag 41067836  T
Q  546 ttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattgataccgatgtc 624  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  41067835 ttgcgacttctgcatctataatttcctcaagaacatgaacagatgttgaaggcagcatcttttgattgataccgatgtc 41067757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 660
Target Start/End: Complemental strand, 41067729 - 41067694
Alignment:
Q  625 cgctttgtccatttgcaagtctgtctgcacttcatc 660  Q
    |||||||||||| |||||||||||||||||||||||    
T  41067729 cgctttgtccatctgcaagtctgtctgcacttcatc 41067694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 162 - 624
Target Start/End: Complemental strand, 8479851 - 8479391
Alignment:
Q  162 gaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagata 261  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |    
T  8479851 gaaattcattgagaagggggagttgaacccttcacacgggtgttgtacgaagttttccctaaaacttgctttttcaatgtttgctgctgttttttagaca 8479752  T
Q  262 aaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttc 361  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  8479751 aaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtcattttgaacatttttcgaaacctggatttc 8479652  T
Q  362 cctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttggtctggattgcacattt 461  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||    
T  8479651 cttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttctgtctctgctggtctggattgcacattt 8479552  T
Q  462 gttgaatgttccaatgccataacacctaatgatgtctgctatgatgtgatacgacagtgtccccgcttacattttcctgtggagttgcgacttctgcatc 561  Q
    | |||||||||||||||||||||| ||||||||| ||||  |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||    
T  8479551 gctgaatgttccaatgccataacatctaatgatggctgc--tgatgtgatacggcagtgtcaccacttacattttcctgtggagttgcgacttctgcatc 8479454  T
Q  562 tataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattgataccgatgtc 624  Q
    || ||||||||||| || |||||||||||||||| ||||  ||||||||||||||||||||||    
T  8479453 tacaatttcctcaataatatgaacagatgttgaaagcagcatcttttgattgataccgatgtc 8479391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 756
Target Start/End: Complemental strand, 2899380 - 2899284
Alignment:
Q  660 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaacaaaaggagcggctgcattttctttatcataagcacgaatacg 756  Q
    |||| ||||||||  ||||||| ||||||| ||||||||| ||||||||| ||| |||  |   ||||||||||||||||||||| ||||| |||||    
T  2899380 caatttgaagttgtttcttgacatgttgcttctgtttctttgataaaaccgaaataaattggttggctgcattttctttatcataggcacggatacg 2899284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 362
Target Start/End: Complemental strand, 10996984 - 10996811
Alignment:
Q  188 acccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagataaaacttacgtgaatccttcgcttgcc 287  Q
    |||||| ||||||||||| ||||| ||||| ||||| || | |||||||| ||  ||||||||||| || |||| ||||| ||| ||  |||||   |||    
T  10996984 accctttgcacgggtgttatacgaggcttttcctaacactttctttttcactgcctgctgctgtttcttggatagaacttgcgtaaaatcttcgtccgcc 10996885  T
Q  288 atacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttcc 362  Q
    || | ||||||||| || ||||| ||  ||||| ||||||||||  |||| | ||||||| ||||||| ||||||    
T  10996884 atccattgatcatattcacgaattcggacccat-aatccaagtccctttggaaatttttcgaaacctgaatttcc 10996811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 626 - 660
Target Start/End: Complemental strand, 8479356 - 8479322
Alignment:
Q  626 gctttgtccatttgcaagtctgtctgcacttcatc 660  Q
    ||||||||||| |||||||||||||||||||||||    
T  8479356 gctttgtccatctgcaagtctgtctgcacttcatc 8479322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 162 - 624
Target Start/End: Original strand, 19936349 - 19936809
Alignment:
Q  162 gaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagata 261  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  19936349 gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagaca 19936448  T
Q  262 aaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttc 361  Q
    |||| | |||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  19936449 aaacctgcgtgaatccttcggcggccatacattgatcatactcccgaatgcgagcccataaatccaagtcattttgaacatttttcgaaacctggatttc 19936548  T
Q  362 cctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttggtctggattgcacattt 461  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| || ||||| |||||||||||||||||||    
T  19936549 cttggattgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttttgcctctgctggtctggattgcacattt 19936648  T
Q  462 gttgaatgttccaatgccataacacctaatgatgtctgctatgatgtgatacgacagtgtccccgcttacattttcctgtggagttgcgacttctgcatc 561  Q
    | ||| |||||||||||||||||| ||||||||| ||||||  |||||||||| || |||| |||||||||||||| |||||||||||||||||||| ||    
T  19936649 gctgactgttccaatgccataacagctaatgatggctgcta--atgtgatacggcattgtcaccgcttacattttcttgtggagttgcgacttctgcgtc 19936746  T
Q  562 tataatttcctcaagaacatgaacagatgttgaaggcagtttcttttgattgataccgatgtc 624  Q
    || | |||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  19936747 tacagtttcctcaagaacatgaacagatgttgagggcagcatcttttgattgataccgatgtc 19936809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 29924752 - 29924688
Alignment:
Q  15 ttccatacttttgtaaactgaacaaaacgacaacgcaagcaatagaaatcatcaccacttcatct 79  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  29924752 ttccatacttctgtaaactgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatct 29924688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 29924295 - 29924242
Alignment:
Q  78 cttgttgaattgcatctaccccaaccttcaagccgttaacagatgatagtactg 131  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29924295 cttgttgaattgcatctaccccaaccttcaagccattaacagatgatagtactg 29924242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 625 - 660
Target Start/End: Original strand, 19936843 - 19936878
Alignment:
Q  625 cgctttgtccatttgcaagtctgtctgcacttcatc 660  Q
    |||||||||||| |||||||||||||||||||||||    
T  19936843 cgctttgtccatctgcaagtctgtctgcacttcatc 19936878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 147 - 346
Target Start/End: Original strand, 2738 - 2934
Alignment:
Q  147 gatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgct 246  Q
    ||||||||||||||||| | |||||||| ||| |||||   |||||| |||||||| || ||||||||||| || | ||| ||||||||||||||||| |    
T  2738 gatgttccaataaaggacactcattgaggaggaggagt---accctttgcacgggttttatacgaagctttacccagaacttgctttttcaatgtttgtt 2834  T
Q  247 gctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacattttt 346  Q
    |||| || || ||||| |||| |||||| |||||  ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  2835 gctgcttcttggataacacttgcgtgaagccttctgttgccatccgttgatcatactcgcgaatgcgagcccataaatccaagtcattttgtacattttt 2934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 15952720 - 15952823
Alignment:
Q  15 ttccatacttttgtaaactgaacaaaacgacaacgcaagcaatagaaatcatcaccacttcatcttgttgaattgcatctaccccaaccttcaagccgtt 114  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15952720 ttccatacttctgtaaactgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatcttgtcgaattgcatctaccccaaccttcaagccgtt 15952819  T
Q  115 aaca 118  Q
    ||||    
T  15952820 aaca 15952823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 352 - 224
Alignment:
Q  146 ggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgc 245  Q
    |||||||||||||||||| |||||||||||| |  |||    |||||| ||||||||||| ||||||||||| || | ||| |||||||||||||||||     
T  352 ggatgttccaataaaggacattcattgagaatgatgaggattaccctttgcacgggtgttatacgaagctttacccataacttgctttttcaatgtttgt 253  T
Q  246 tgctgttttttagataaaacttacgtgaa 274  Q
    ||||| || || ||||| |||| ||||||    
T  252 tgctgcttcttggataacacttgcgtgaa 224  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 660 - 750
Target Start/End: Original strand, 32235006 - 32235096
Alignment:
Q  660 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacccaaacaaaaggagcggctgcattttctttatcataagcacg 750  Q
    |||| ||||||||  ||||||||||||||| ||||||||| |||||||||  || |||  |   ||||||||||||||||||||| |||||    
T  32235006 caatttgaagttgtttcttgacttgttgcttctgtttctttgataaaaccagaataaattggctggctgcattttctttatcataggcacg 32235096  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 1636749 - 1636685
Alignment:
Q  15 ttccatacttttgtaaactgaacaaaacgacaacgcaagcaatagaaatcatcaccacttcatct 79  Q
    ||||||||||||||| |||||||||||| |  | ||| ||||  |||||||||||||||||||||    
T  1636749 ttccatacttttgtacactgaacaaaacaatcaggcaggcaactgaaatcatcaccacttcatct 1636685  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 709
Target Start/End: Complemental strand, 30418679 - 30418630
Alignment:
Q  660 caatctgaagttgcctcttgacttgttgctgctgtttcttagataaaacc 709  Q
    |||| ||||||||  ||||||||||||||| ||||||||| |||||||||    
T  30418679 caatttgaagttgtttcttgacttgttgcttctgtttctttgataaaacc 30418630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 352
Target Start/End: Complemental strand, 26657379 - 26657175
Alignment:
Q  151 ttccaataaaggaaattcat--tga-gaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctg 247  Q
    ||||||||||||||||||||  ||| ||||  ||||  | |||||| || |||||||| |||| ||| || ||||| || ||| |||| | || ||| ||    
T  26657379 ttccaataaaggaaattcatgatgaagaagatggaggagtaccctttgcccgggtgttgtacggagcctttcctaacacttgccttttaactgcttgttg 26657280  T
Q  248 ctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttc 347  Q
    ||| ||||| ||||||||||  ||||| |||||    ||||| ||||||||||| || ||||| || ||| |||||||||| ||||| || ||||| |||    
T  26657279 ctgctttttggataaaacttgtgtgaagccttcatccgccatccgttgatcatattcacgaatacgtgcctataaatccaaatcattctggacattcttc 26657180  T
Q  348 aaaac 352  Q
     ||||    
T  26657179 gaaac 26657175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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