View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5149-Insertion-4 (Length: 728)
Name: NF5149-Insertion-4
Description: NF5149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5149-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 666; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 7 - 716
Target Start/End: Original strand, 52071606 - 52072316
Alignment:
| Q |
7 |
aacaattagcataaattcttcaaaacaattagtattagtaatcactttttatgataatcaaatattacctatttccaagtagtttgtgaagtcggatgat |
106 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52071606 |
aacaattagcataaattcttcaaaataattagtattagtaatcactttttatgataatcaaatgttacctatttccaagtagtttgtgaagtcggatgat |
52071705 |
T |
|
| Q |
107 |
aagatcttcttcatctgaggakatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacct |
206 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52071706 |
aagatcttcttcatctgaggatatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacct |
52071805 |
T |
|
| Q |
207 |
gcatggcataaatatatttacaaaaacatgaaggnnnnnnntataagcaaacaaaagtgtgtcattgatgatctatgtaagaagatacataattaatgaa |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52071806 |
gcatggcataaatatatttacaaaaacatgaaggaaaaaaatataagcaaacaaaagtgcgtcattgatgatctatgtaagaagatacataattaatgaa |
52071905 |
T |
|
| Q |
307 |
cctgctcttttgggaaggtttctccattttccttcaccatggagcttaatgtagtctgagagaattttgtcttcatgagctgtccaagcacctctgttca |
406 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52071906 |
cctgctcttttgggaaggtttctccattttccttcaccatggagcttaatgtagtctgagagaattttgtcttcatgagctgtccaagcacctctgttca |
52072005 |
T |
|
| Q |
407 |
atccctcctttgcacaacaaggacttctccccattgatgctcttcttaattaggctgttttggattcctacctcactctccggattggagtacgtgtttg |
506 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52072006 |
atccctcctttgcacaacaaggacttctccccattgatgctcttcttaattaggctgttttggattcctacctcactctccggattggagtacgtgtttg |
52072105 |
T |
|
| Q |
507 |
gatgtagacagaattaaataacttgcaagagtaattggtaaccaccyatatatacacatatgtgccaatatatggatactttaggttgcatatggaattg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52072106 |
gatgtagacagaattaaataacttgcaagagtaattggtaaccacctatatatacacatatgtgccaatatatggatactttaggttgcatatggaattg |
52072205 |
T |
|
| Q |
607 |
ctatcatttatgtcatgtcac-gaacaatgttagaatgggacatgcacttggctagaaatttatatctggcttcaacagtgttatactttattttagata |
705 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52072206 |
ctatcatttatgtcatgtcacggaacaatgttagaatgggacatgcacttggctagaaatttatatctggcttcaacagtgttatactttattttagata |
52072305 |
T |
|
| Q |
706 |
cacctactaaa |
716 |
Q |
| |
|
||||||||||| |
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|
| T |
52072306 |
cacctactaaa |
52072316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 9622010 - 9621943
Alignment:
| Q |
129 |
atgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||| |
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|
| T |
9622010 |
atgttacctctctttatatctggtctaagataattcatccatctaagtctacaacttttcccacatct |
9621943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 7195424 - 7195365
Alignment:
| Q |
134 |
gcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccaca |
193 |
Q |
| |
|
||||||||| ||| ||||| | ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
7195424 |
gcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
7195365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 5843130 - 5843176
Alignment:
| Q |
150 |
ggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
|||||||||||||| | |||||| | ||||||||||||||||||||| |
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|
| T |
5843130 |
ggtcttagataatttatccatcttaatctacaactttttccacatct |
5843176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 5849872 - 5849918
Alignment:
| Q |
150 |
ggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
|||||||||||||| | |||||| | ||||||||||||||||||||| |
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| T |
5849872 |
ggtcttagataatttatccatcttaatctacaactttttccacatct |
5849918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 48892585 - 48892676
Alignment:
| Q |
105 |
ataagatcttcttcatctgaggakatgttgcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
|||||||| ||||| |||| | ||||| |||||||| ||||||||||||||||| |||| |||||| ||||| ||||||||||||||||| |
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|
| T |
48892585 |
ataagatcatcttcttctggagttatgtttcctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccacatct |
48892676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 16127400 - 16127475
Alignment:
| Q |
135 |
cctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacctgcat |
210 |
Q |
| |
|
|||||||||||||| | ||||| |||||| | |||||| | ||||||||| |||||||||||| ||||||||||| |
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|
| T |
16127400 |
cctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccacatcttaataaacctgcat |
16127475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 16138910 - 16138984
Alignment:
| Q |
135 |
cctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccacatcttcttaaacctgca |
209 |
Q |
| |
|
|||||||||||||| ||| ||| ||| || | |||||| | ||||||||| |||||||||||| |||||||||| |
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|
| T |
16138910 |
cctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatcttaataaacctgca |
16138984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 1319331 - 1319385
Alignment:
| Q |
142 |
taatatctggtcttagataattcaaccatctaagtctacaactttttccacatct |
196 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
1319331 |
taatatcaggccttagataattattccatctaagtctacaactctttccacatct |
1319385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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