View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5149_low_1 (Length: 624)
Name: NF5149_low_1
Description: NF5149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5149_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 21 - 622
Target Start/End: Original strand, 22660226 - 22660827
Alignment:
| Q |
21 |
gcagcaatagtgactgaggaagacaataccaaaacaccagacttatggaggctatcaactgttcacagagtggaagaattgaaatcaataatcaggatgg |
120 |
Q |
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| T |
22660226 |
gcagcaatagtgactgaggaagacaataccaaaacaccagacttatggaggctatcaactgttcacagagtggaagaattgaaatcaataatcaggatgg |
22660325 |
T |
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| Q |
121 |
gaccaatatgggcatcaggcattcttctaatcacagcatatgcccaacaaggaactttctcccttcaacaagccaaaactatgaacagacacctaaccaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22660326 |
gaccaatatgggcatcaggcattcttctaatcacagcatatgcccaacaaggaactttctcccttcaacaagccaaaactatgaacagacacctaaccaa |
22660425 |
T |
|
| Q |
221 |
atcattcgaaatcccagcagggtccatgtcggtattcaccatcctcacaatgctcttcactactgccctctatgaccgtgtcttaatccgagtggcccgt |
320 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22660426 |
gtccttcgaaatcccagcagggtccatgtcggtattcaccatcctcacaatgctcttcactactgccctctatgaccgtgtcttaatccgagtagcccgt |
22660525 |
T |
|
| Q |
321 |
agattcactggactcgaccgtggtataaccttccttcacagaatgggcattggttttgtgatctcactttttgctacctttgttgctggattcgtcgaaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22660526 |
agattcactggactcgaccgtggtataaccttccttcacagaatgggcattggttttgtgatctcactttttgctacctttgttgctggattcgtcgaaa |
22660625 |
T |
|
| Q |
421 |
tgaaacgaaagaaggtcgctatggaacacggactcatcgaacactatagtgaaataatcccaatctcagtcttttggcttgttccacagtatagtcttca |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22660626 |
tgaaacgaaagaaggtcgctatggaacacggactcatcgaacactctagtgaaataatcccaatctcagtgttttggcttgttccacagtatagtcttca |
22660725 |
T |
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| Q |
521 |
tggaatggctgaagcttttatgtcaatagggcatttagagtttttctatgatcaagctcctgagagtatgacaagtactgcaatggcatattcttcgaca |
620 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |
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| T |
22660726 |
tggaatggctgaagcttttatgtcaatagggcatttagagtttttctatgatcaagctcctgagagtatgacaagtactgcaatggcatttttttggaca |
22660825 |
T |
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| Q |
621 |
tc |
622 |
Q |
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|| |
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| T |
22660826 |
tc |
22660827 |
T |
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