View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5149_low_2 (Length: 382)

Name: NF5149_low_2
Description: NF5149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5149_low_2
NF5149_low_2
[»] chr7 (6 HSPs)
chr7 (164-372)||(43119097-43119298)
chr7 (14-167)||(43119647-43119801)
chr7 (14-128)||(43119461-43119575)
chr7 (126-169)||(43119322-43119366)
chr7 (174-210)||(49013049-49013085)
chr7 (220-252)||(38177747-38177779)
[»] chr8 (1 HSPs)
chr8 (166-252)||(25105711-25105797)
[»] chr4 (3 HSPs)
chr4 (164-251)||(8019961-8020048)
chr4 (171-208)||(7593144-7593181)
chr4 (172-229)||(8019528-8019585)
[»] chr6 (2 HSPs)
chr6 (164-252)||(21917346-21917434)
chr6 (171-241)||(18239246-18239315)
[»] chr2 (6 HSPs)
chr2 (173-252)||(8442616-8442695)
chr2 (171-249)||(3960856-3960934)
chr2 (164-246)||(26674105-26674187)
chr2 (178-208)||(37940462-37940492)
chr2 (164-252)||(22311667-22311755)
chr2 (164-204)||(36168676-36168716)
[»] chr3 (2 HSPs)
chr3 (183-251)||(18391942-18392010)
chr3 (177-240)||(54697932-54697995)
[»] scaffold0236 (1 HSPs)
scaffold0236 (171-229)||(16928-16986)
[»] chr5 (1 HSPs)
chr5 (174-202)||(15069748-15069776)
[»] chr1 (2 HSPs)
chr1 (164-204)||(23998908-23998948)
chr1 (164-252)||(27580744-27580832)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 164 - 372
Target Start/End: Complemental strand, 43119298 - 43119097
Alignment:
Q  164 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactccttactcattc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |    
T  43119298 aaatatatgcatttatatcatgtatttactacaaaactatagtaatgaatgttgccatttattttaaaaaatggagagaatctcaactcctt-------c 43119206  T
Q  264 aaagaaataaaactcactactctcacaaataatccggccactcttcttcgcattcaatttcgttgttttcgtatacaccgactcactcaacattgctacc 363  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  43119205 aaagaaataaaactcgctactctcagtaataatccggccactcttcttcgcattcaatttcgttgtttttgtatacaccgactcactcaacattgctact 43119106  T
Q  364 tttgcttct 372  Q
    |||||||||    
T  43119105 tttgcttct 43119097  T

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Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 43119801 - 43119647
Alignment:
Q  14 gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  43119801 gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcataaatgttttattcacgagtgtagatcattt 43119702  T
Q  114 ctattacttaataaaaatggcaatatcaattcttatag-tttcttgtgtataaat 167  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  43119701 ctattacttaataaaaatggcaatatcaattcttatagtttttttgtgtataaat 43119647  T

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Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 43119575 - 43119461
Alignment:
Q  14 gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatct 113  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43119575 gcagagagtgaaggagagttgaaagaagaggatttaggtctggtaggtgggcacgaccatcatcattcatcaatgttttattcacgagtgtagatcatct 43119476  T
Q  114 ctattacttaataaa 128  Q
    |||||||||||||||    
T  43119475 ctattacttaataaa 43119461  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 43119366 - 43119322
Alignment:
Q  126 aaaaatggcaatatcaattcttatag-tttcttgtgtataaatat 169  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  43119366 aaaaatggcaatatcaattcttatagtttttttgtgtataaatat 43119322  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 49013049 - 49013085
Alignment:
Q  174 atttatatcatgtatttactacaaaactatagtaacg 210  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49013049 atttatatcatgtatttactacataactatagtaacg 49013085  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 38177779 - 38177747
Alignment:
Q  220 atttattttaaaaaatggagagaatctcaactc 252  Q
    ||||||||||| |||||||||||||||||||||    
T  38177779 atttattttaataaatggagagaatctcaactc 38177747  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 25105711 - 25105797
Alignment:
Q  166 atatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 252  Q
    |||| |||||||||||  ||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||| |||||||||||    
T  25105711 atatgtgcatttatatagtgtatttactacaaaactatagtaatggatgttaccatttattttagaaaatggagataatctcaactc 25105797  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 8019961 - 8020048
Alignment:
Q  164 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaact 251  Q
    |||||| ||||||||||||||||||||||  |||||||||||||| |||  ||||||||||||||| ||||| ||||| |||||||||    
T  8019961 aaatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacattgccatttattttagaaaattgagaggatctcaact 8020048  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 7593144 - 7593181
Alignment:
Q  171 tgcatttatatcatgtatttactacaaaactatagtaa 208  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  7593144 tgcatttatatcatatatttacttcaaaactatagtaa 7593181  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 8019528 - 8019585
Alignment:
Q  172 gcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttatttta 229  Q
    ||||||| |||||||||||||  |||||||||||||| |||  |||||||||| ||||    
T  8019528 gcatttacatcatgtatttacatcaaaactatagtaatgaacattgccatttaattta 8019585  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 21917434 - 21917346
Alignment:
Q  164 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 252  Q
    |||||| || ||||||||||||||||||||||||||||||||||| | |   ||| ||||||||||| |||||||||  ||||||||||    
T  21917434 aaatatgtgtatttatatcatgtatttactacaaaactatagtaatggaaactgcaatttattttaagaaatggagaatatctcaactc 21917346  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 18239246 - 18239315
Alignment:
Q  171 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagag 241  Q
    ||||||||||| |||||||||| |||||| |||||||| | || ||| |||||||| || |||||||||||    
T  18239246 tgcatttatataatgtatttac-acaaaaatatagtaatggatattgtcatttattgtagaaaatggagag 18239315  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 8442695 - 8442616
Alignment:
Q  173 catttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 252  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||||||||||||  || |||| |||||||||| |||||    
T  8442695 catttatatcatgtatttactacaaaattatagtaatgaaaattgccatttattcaaagaaattgagagaatctgaactc 8442616  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 3960856 - 3960934
Alignment:
Q  171 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaa 249  Q
    |||||||||||||||||||||| ||||||||||||||| | |  ||  |||||||  || ||||||||||| |||||||    
T  3960856 tgcatttatatcatgtatttaccacaaaactatagtaatggacattatcatttatcgtagaaaatggagaggatctcaa 3960934  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 26674187 - 26674105
Alignment:
Q  164 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatct 246  Q
    |||||| || |||||||||||||||||||| |||||| ||||||| | |   |  |||||||||||  |||||||||||||||    
T  26674187 aaatatgtgtatttatatcatgtatttactccaaaacgatagtaatggacactatcatttattttaggaaatggagagaatct 26674105  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 37940462 - 37940492
Alignment:
Q  178 atatcatgtatttactacaaaactatagtaa 208  Q
    |||||||||||||||||||||||||||||||    
T  37940462 atatcatgtatttactacaaaactatagtaa 37940492  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 22311755 - 22311667
Alignment:
Q  164 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 252  Q
    |||||| |||||||||||||| |||||||   ||||||||||||| | |  |||| ||||||| ||  ||||| |||| ||||||||||    
T  22311755 aaatatgtgcatttatatcatttatttacacgaaaactatagtaatggacattgcaatttattgtagcaaatgaagaggatctcaactc 22311667  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 36168716 - 36168676
Alignment:
Q  164 aaatatatgcatttatatcatgtatttactacaaaactata 204  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  36168716 aaatatatgcatttatatcatttatttattccaaaactata 36168676  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 18391942 - 18392010
Alignment:
Q  183 atgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaact 251  Q
    |||||||||||||||||||||||||| |  | |||||||||||| ||  ||||||||||||||||||||    
T  18391942 atgtatttactacaaaactatagtaatgggttttgccatttattataggaaatggagagaatctcaact 18392010  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 54697932 - 54697995
Alignment:
Q  177 tatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggaga 240  Q
    |||||||| ||||||||||||||||||||||||| || || | |||||| ||||||||| ||||    
T  54697932 tatatcatatatttactacaaaactatagtaacggatatttcaatttatcttaaaaaatagaga 54697995  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 16986 - 16928
Alignment:
Q  171 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttatttta 229  Q
    ||||||||||| ||| ||||||||||||||||||  || |||  |||||||||||||||    
T  16986 tgcatttatatgatgcatttactacaaaactatacaaatgaacattgccatttatttta 16928  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 15069776 - 15069748
Alignment:
Q  174 atttatatcatgtatttactacaaaacta 202  Q
    |||||||||||||||||||||||||||||    
T  15069776 atttatatcatgtatttactacaaaacta 15069748  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 23998948 - 23998908
Alignment:
Q  164 aaatatatgcatttatatcatgtatttactacaaaactata 204  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  23998948 aaatatgtgcatttatattatgtatttactacaaaattata 23998908  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 27580744 - 27580832
Alignment:
Q  164 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 252  Q
    |||||| || |||||||| ||||||||| ||||||| ||||||||   |  ||| ||||||||||| |||||  |||| ||||||||||    
T  27580744 aaatatgtgtatttatattatgtatttattacaaaattatagtaatagacattgtcatttattttagaaaataaagaggatctcaactc 27580832  T

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