View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5149_low_4 (Length: 238)
Name: NF5149_low_4
Description: NF5149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5149_low_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 47461736 - 47461956
Alignment:
| Q |
18 |
tatcacgcatatatgctatataaaaatgtcttcatcgactgctaagaaatgtgcaatatatttccaatagaaacaatttaatttgtattagtgaataacg |
117 |
Q |
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| T |
47461736 |
tatcacgcatatatgctatataaaaatgtcttcattgactgctaagaaatgtgcaatatatttgcaatagaaacaatttaatttgtattagtgaataacg |
47461835 |
T |
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| Q |
118 |
taactgaacaagtgtcggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtgaaagaaa |
217 |
Q |
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| T |
47461836 |
taactgaacaagtgtcggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtcaaagaaa |
47461935 |
T |
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| Q |
218 |
ttagctttaagaaaacatgat |
238 |
Q |
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| T |
47461936 |
ttagatttaagaaaagatgat |
47461956 |
T |
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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 47468797 - 47468884
Alignment:
| Q |
134 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtgaaagaaattag |
221 |
Q |
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| T |
47468797 |
ggtgtttgtttgcaggtgcaaatttgagttttgctatgcgtgtggtgcaggatggacatcttctcatggtggttgtcaaagaaattag |
47468884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 47464682 - 47464768
Alignment:
| Q |
134 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttgtgaaagaaatta |
220 |
Q |
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| T |
47464682 |
ggtgtttgtttgcaggtgcaaatttcagttttgctatgctcgcggagcacaatcaacatcttctcaccgtggttgtcaaagaaatta |
47464768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 47456058 - 47456132
Alignment:
| Q |
134 |
ggtgtttgtttgcaggtgcaagtttgagttttgctattcttgcggagcacaatggacatcttctcatggtggttg |
208 |
Q |
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| T |
47456058 |
ggtgtttgtttgcaggtgccggtttgagttttgctatgcttgtggagaacaatggacttctactcatggtggttg |
47456132 |
T |
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