View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5149_low_6 (Length: 224)
Name: NF5149_low_6
Description: NF5149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5149_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 49158280 - 49158458
Alignment:
| Q |
31 |
ttatttcacagcgtaaaaacaaaccctaaattttccacctcccctcctccacaattcactccttcactttcaggcagtacataaaccaccaaattcaatt |
130 |
Q |
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| T |
49158280 |
ttatttcgcagcgtaaaaacaaaccctaaattttccacctcccctcctccacaattcactcctttactttcaggcagtacataaaccaccaaattcaatt |
49158379 |
T |
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| Q |
131 |
gttcgaaacagcccaatgcatgtaag-aaaaaatggttcaatcgaacaacaaaatccgccaccaaaaaacccctattcc |
208 |
Q |
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| T |
49158380 |
gttcgaaacagcccaatgcatgtaagaaaaaaatggttcaatcgaacaacaaaatccgccaccaaaaaacccctattcc |
49158458 |
T |
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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 2866524 - 2866366
Alignment:
| Q |
50 |
caaaccctaaattttccacctcccctcctccacaattcactccttcactttcaggcagtacataaaccaccaaattcaattgttcgaaacagc------- |
142 |
Q |
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|||||||||||||||||| |||||||||||| ||||||| ||||| ||||||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
2866524 |
caaaccctaaattttccagctcccctcctccgcaattcattcctttactttcaagcagcacataaaccaccaaattcaattattcgaaacagcccaacac |
2866425 |
T |
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| Q |
143 |
ccaatgcatgtaagaaaaaatggttcaatcgaacaacaaaatccgccaccaaaaaaccc |
201 |
Q |
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| T |
2866424 |
ccaacgcatgttagaaaaaatgctttaatcgaacaacaaaaaccgccactaaaaaaccc |
2866366 |
T |
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