View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5150-Insertion-2 (Length: 839)
Name: NF5150-Insertion-2
Description: NF5150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5150-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 820; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 8 - 835
Target Start/End: Original strand, 39351511 - 39352338
Alignment:
| Q |
8 |
tctataacattgaatgacccacgatctacgtataagttgcagcctaagattgcaaaaatgttgtatccacatcagcgggaaggattgaagtggctctggt |
107 |
Q |
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| T |
39351511 |
tctataacattgaatgacccacgatctacgtataagttgcagcctaagattgcaaaaatgttgtatccacatcagcgggaaggattgaagtggctctggt |
39351610 |
T |
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| Q |
108 |
cattgcatgttcggggtaaaggtggaatcttgggagatgatatgggtttgggaaaaacaatgcaggtaaggaaatgaaatgagaagtaatatattacaac |
207 |
Q |
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| T |
39351611 |
cattgcatgttcggggtaaaggtggaatcttgggagatgatatgggtttgggaaaaacaatgcaggtaaggaaatgaaatgagaagtaatatattacaac |
39351710 |
T |
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| Q |
208 |
ttgtagtttgcaatagttagtttgtgatttaccaatgctggttttttcttgcagatttgtggctttcttgctggactgtttcattcccgtttaataagaa |
307 |
Q |
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| T |
39351711 |
ttgtagtttgcaatagttagtttgtgatttaccaatgctggttttttcttgcagatttgtggctttcttgctggactgtttcattcccgtttaattagaa |
39351810 |
T |
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| Q |
308 |
gggtattggttgtggctcccaaaacactattgccacattggatcaaagaattatcagttgttggcctatctgagaagacgaaagagtgcggctgcctgac |
407 |
Q |
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| T |
39351811 |
gggtattggttgtggcccccaaaacactattgccacattggatcaaagaattatcagttgttggcctatctgagaagacgaaagagtgcggctgcctgac |
39351910 |
T |
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| Q |
408 |
tttatttatcagaatagtttatttaaaatgcttatttaaaacttttcttctttaataacaacaattgccaatgtatgctgttctgcagatattttggagc |
507 |
Q |
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| T |
39351911 |
tttatttatcagaatagtttatttaaaatgcttatttaaaacttttcttctttaataacaacaattgccaatgtatgctgttctgcagatattttggagc |
39352010 |
T |
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| Q |
508 |
ttgtgcaaaactcagagagtatgaacttcagtacatacttcaggtacttaatctttcttgttttgcccttttggttaaatgtatctaggaagtaagtacg |
607 |
Q |
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| T |
39352011 |
ttgtgcaaaactcagagagtatgaacttcagtacatacttcaggtacttaatctttcttgttttgcccttttggttaaatgtatctaggaagtaagtacg |
39352110 |
T |
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| Q |
608 |
tggataataaatatctctcattttgtacgtggacttataatcgagcttgagaatgtgaagggatcctattttgtgtgcgtcaatttatttcagaaaatat |
707 |
Q |
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| T |
39352111 |
tggataataaatatctctcattttgtacgtggacttataatcgagcttgagaatgtgaagggatcctattttgtgtgcgtcaatttatttcagaaaatat |
39352210 |
T |
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| Q |
708 |
atatttaaaattggttctctggttcatatttaactgattgctgaaaaattggggttaggtgcttgtatctgatttcttcatttctatcaatattaaacta |
807 |
Q |
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| T |
39352211 |
atatttaaaattggttctctggttcatatttaactgattgctgaaaaattggggttaggtgcttgtatctgatttcttcatttctatcaatattaaacta |
39352310 |
T |
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| Q |
808 |
cgttttttcttgtctcactttaggacaa |
835 |
Q |
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| T |
39352311 |
cgttttttcttgtctcactttaggacaa |
39352338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 238 - 439
Target Start/End: Original strand, 39366267 - 39366467
Alignment:
| Q |
238 |
accaatgctggttttttcttgcagatttgtggctttcttgctggactgtttcattcccgtttaataagaagggtattggttgtggctcccaaaacactat |
337 |
Q |
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| T |
39366267 |
accaatgctggttttttcttgcagatttgttgctttctagctggactgtttgattcacatttaattagaagggtgttgattgtggtcccaaaaacactat |
39366366 |
T |
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| Q |
338 |
tgccacattggatcaaagaattatcagttgttggcctatctgagaagacgaaagagtgcggctgcctgactttatttatcagaatagtttatttaaaatg |
437 |
Q |
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| T |
39366367 |
tgccgcattggatcaaagagttatcacttgttggtctatctgatatcactaaacagtggggctacctgattttattcatca-cattgtttatttaaaatg |
39366465 |
T |
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| Q |
438 |
ct |
439 |
Q |
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|| |
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| T |
39366466 |
ct |
39366467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 39362042 - 39362182
Alignment:
| Q |
35 |
acgtataagttgcagcctaagattgcaaaaatgttgtatccacatcagcgggaaggattgaagtggctctggtcattgcatgttcggggtaaaggtggaa |
134 |
Q |
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| T |
39362042 |
acgtataagttggagggaaaaattgcaaaaatgttgtatccacatcagagggaaggattgaagtggctctggtcattacattgtcagggtaaaggtggaa |
39362141 |
T |
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| Q |
135 |
tcttgggagatgatatgggtttgggaaaaacaatgcaggta |
175 |
Q |
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| T |
39362142 |
tcctcgcagatgacatgggattgggaaaaacaatgcaggta |
39362182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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