View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5150-Insertion-3 (Length: 693)
Name: NF5150-Insertion-3
Description: NF5150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5150-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 43096767 - 43096422
Alignment:
| Q |
8 |
ataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgcttacacattt |
107 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
43096767 |
ataagcgcattgaaggtcacaatcgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcaacaaccattcctcacttacacattt |
43096668 |
T |
|
| Q |
108 |
cacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaatgacttacatcacataaaccttgaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
43096667 |
cacatatgagaattgtgtgcgtgcaaacattgcgctcggaaatttcaagatgaagagactgtgctcgattcaaaagacctacatcacataaaccttgaat |
43096568 |
T |
|
| Q |
208 |
tacaacattgtagcaataagcatcaggagttaaacctatttgattcatctcctctaacatcttaccagcttcaccaacccttccctcctccgacaaacca |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43096567 |
tacaacattgtagcaataagcatcatgagttaaacctatttgattcatctcctctaacatcttaccagcttcaccaacccttccctcctccgacaaacca |
43096468 |
T |
|
| Q |
308 |
cgtatcataatagcgtacaaaacaacatcaggtacaatcccctcct |
353 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43096467 |
cgtatcataatagcgtacaaaacaacatcaggcacaatcccctcct |
43096422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 353 - 693
Target Start/End: Complemental strand, 43095698 - 43095358
Alignment:
| Q |
353 |
ttaaccaagcaataaggttcgaagctaagattctcaaatttgagagctacccaaatgcagaaacgaatacctcgttgatcggaactaacgaaagaggttg |
452 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
43095698 |
ttaaccaagcaataaggttcaaagctaagattctcaaatttgagagctacccaaatgcagaaacgaatacctcgttgatcggaactaacggaagaggttg |
43095599 |
T |
|
| Q |
453 |
tgagagaattgttgtggttgcggcggaacccgaagaagcgaggggttttgaaaactttcttcaacattgcttctggtagtgttaatcagaatcgagattt |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43095598 |
tgagagaattgttgtggttgcggcggaacccgaagaagcaaggggttttgaaaactttcttcaacattgcttctggtagtgttaatcagaatcgagattt |
43095499 |
T |
|
| Q |
553 |
aacttcgatagaaaagaaacatcgaatgtacattcgttgctttgtagcttttgaggttgtgtggctgttgaggttgtttgtgttgccgaatgtcagtatg |
652 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
43095498 |
aaattcgatagaaaagaaacaacgaatgtacattcgttgcattgtggcttttgaggttgtgtggctattgaggttgtttgtgtcgccgaatgtcagtatg |
43095399 |
T |
|
| Q |
653 |
tcacacgattgttctttgaggtttaagggtattgttttgga |
693 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
43095398 |
tcacacgattgttcttcgaggtttaagggtattgttttgga |
43095358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 277; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 17487791 - 17488139
Alignment:
| Q |
8 |
ataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgcttacacattt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
17487791 |
ataagcgtattgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataattcttgtgcctcagcaaccattcctcgcttacacattt |
17487890 |
T |
|
| Q |
108 |
cacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaatgacttacatcacataaaccttgaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
17487891 |
cacatatgagaattgtgtgcgtgcaaacattgtgctcggaaatttcaagacgaagagactgtgctcgattcaaaagacctacatcacataaaccttgaat |
17487990 |
T |
|
| Q |
208 |
tacaacattgtagcaataagcatcaggagttaaacctatttgattcatctcctctaacatcttaccagcttcaccaacccttccctcctccgacaaacca |
307 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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|
| T |
17487991 |
tacagcattgtagcaataagcatcaggagttaaacctatctgagtcatctcctctaacatcttagcagcttcaccaaccctgccctccttcgacaaacca |
17488090 |
T |
|
| Q |
308 |
cgtatcataatagcgtacaaaacaacatcaggtacaatcccctccttaa |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
17488091 |
cgtatcataatagcgtacaaaacaacatcaggcacaatcccctgcttaa |
17488139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 6779287 - 6778939
Alignment:
| Q |
8 |
ataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgcttacacattt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6779287 |
ataagcgtattgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataattcttgtgcctcagcaaccattcctcgcttacacattt |
6779188 |
T |
|
| Q |
108 |
cacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaatgacttacatcacataaaccttgaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
6779187 |
cacatatgagaattgtgtgcgtgcaaacattgtgctcggaaatttcaagactaagagactgtgctcgattcaaaagatctacatcacataaaccttgaat |
6779088 |
T |
|
| Q |
208 |
tacaacattgtagcaataagcatcaggagttaaacctatttgattcatctcctctaacatcttaccagcttcaccaacccttccctcctccgacaaacca |
307 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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|
| T |
6779087 |
tacagcattgtagcaataagaatcaggagttaaacctatctgagtcatctcctctaacatcttagcagcttcaccaaccctgccctccttcgacaaacca |
6778988 |
T |
|
| Q |
308 |
cgtatcataatagcgtacaaaacaacatcaggtacaatcccctccttaa |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6778987 |
cgtatcataatagcgtacaaaacaacatcaggcacaatcccctccttaa |
6778939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 353 - 567
Target Start/End: Complemental strand, 6778249 - 6778030
Alignment:
| Q |
353 |
ttaaccaagcaataaggttcgaagctaagattctcaaatttgagagctacccaaatgcagaaacgaatacctcgttgatcggaactaacgaaagaggttg |
452 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
6778249 |
ttaaccaagcaataaggttcgtagctaagattctcaaatttgagagctacccagatgcagaaacgaatacctcgttggtcggaactaacggaagaggttg |
6778150 |
T |
|
| Q |
453 |
tgagagaattgttgtggttgcggcggaacccgaagaagcgaggggttttgaaaactttcttcaacattgcttct-----ggtagtgttaatcagaatcga |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
6778149 |
tgagagaattgttgtggttgcggcggaacccgaagaagcgaggggtttcgaaagctttcttcaacattgcttctggctaggtagtgttaatcagaatgga |
6778050 |
T |
|
| Q |
548 |
gatttaacttcgatagaaaa |
567 |
Q |
| |
|
|||| || |||||| ||||| |
|
|
| T |
6778049 |
gattcaaattcgatggaaaa |
6778030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 353 - 567
Target Start/End: Original strand, 17488829 - 17489048
Alignment:
| Q |
353 |
ttaaccaagcaataaggttcgaagctaagattctcaaatttgagagctacccaaatgcagaaacgaatacctcgttgatcggaactaacgaaagaggttg |
452 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
17488829 |
ttaaccaagcaataaggttcgtagctaagattctcaaatttgagagctacccagatgcagaaacgaatacctcgttggtcggaactaacggaagaggttg |
17488928 |
T |
|
| Q |
453 |
tgagagaattgttgtggttgcggcggaacccgaagaagcgaggggttttgaaaactttcttcaacattgcttct-----ggtagtgttaatcagaatcga |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17488929 |
tgagagaattgttgtggttgcggcggaacccgaaaaagcgaggggttccgaaagctttcttcaacattgcttctggttaggtagtgttaatcagaatcga |
17489028 |
T |
|
| Q |
548 |
gatttaacttcgatagaaaa |
567 |
Q |
| |
|
|||| || |||||| ||||| |
|
|
| T |
17489029 |
gattcaaattcgatggaaaa |
17489048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 22423859 - 22423511
Alignment:
| Q |
8 |
ataagcgcattgaaggtcacaaccgaaagttcacatccaagcttctccatccgattaaataattcttttgcctcagcaaccattcctcgcttacacattt |
107 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22423859 |
ataagcgtattgaaggtcacaaccgaaggttcacatccaagcttctccatttgattaaataattcttgtgcctcagcaaccattcctcgcttacacattt |
22423760 |
T |
|
| Q |
108 |
cacatatgagaattgtgtgcgtgcaaacattgtgcttggaaattttaagatgaagagactgtgctcgattcaaatgacttacatcacataaaccttgaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
22423759 |
cacatatgagaattgtgtgcgtgcaaacattgtgctcagaaatttcaagaagaagagaatgtgctcgattcaaaagacctacatcacataaaccttgaat |
22423660 |
T |
|
| Q |
208 |
tacaacattgtagcaataagcatcaggagttaaacctatttgattcatctcctctaacatcttaccagcttcaccaacccttccctcctccgacaaacca |
307 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||| | ||||| ||||||||| |
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|
| T |
22423659 |
tacagcattgtagcaataagcatcaggagttaaacctatctgagtcatctcatctaacatcttagcagcttcaccaaccctgcactccttagacaaacca |
22423560 |
T |
|
| Q |
308 |
cgtatcataatagcgtacaaaacaacatcaggtacaatcccctccttaa |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22423559 |
cgtatcataatagcgtacaaaacaacatcaggcacaatcccctccttaa |
22423511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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