View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5150_high_1_N (Length: 487)
Name: NF5150_high_1_N
Description: NF5150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5150_high_1_N |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 487
Target Start/End: Original strand, 27775377 - 27775853
Alignment:
| Q |
11 |
gcagagagaaatatgctgaaatatacataagaagccatgcttataattcaatatgaggattgaatcataaaatgacaaacttgtggagaaaatagcgagt |
110 |
Q |
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| T |
27775377 |
gcagagagaaatatgctgaaatatacataagaagccatgcttataattcaatatgaggattgaatcataaaatgacaaacttgtggagaaaatagcgagt |
27775476 |
T |
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| Q |
111 |
ttgcttgtggatgcaacttgcaattgtctgtcgagtttggtgttacgaattagttacttctgttgaaagaaataaattatttgtttgatagttagatatt |
210 |
Q |
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| T |
27775477 |
ttgcttgtggatgcaacttgcaattgtctgtcaaccttggtcctacgaattagttacttctgttgaaagaaataaattatttgtttgatagttagatatt |
27775576 |
T |
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| Q |
211 |
ggttgatattagttaagtctttatgcattattgaaatagcaccaatttaaaagttaatttcgagacnnnnnnngaaaagaaagaggaagactacacagtg |
310 |
Q |
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| T |
27775577 |
ggttgaaattagttaagtctttatgcattattgaaatagcaccaatttaaaagttaatttcgagacaaaaagagaaaagaaagaggaagactacacattg |
27775676 |
T |
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| Q |
311 |
caataatagattaatatttttacgtgtgttttgaacatgttattttggtatagttgcagtatcgactcttttaatctttcatttcctcttcctttcgaaa |
410 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775677 |
caatgatagattaatatttttaagtgtgttttgaacatgttattttggtatagttgcagtatcgactcttttaatctttcatttcctcttcctttcgaaa |
27775776 |
T |
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| Q |
411 |
ctttaactaactgccactttgtgtgtgcaagcttgcattttaatattcatgttacaacagagatattagacttcatc |
487 |
Q |
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| T |
27775777 |
gtttaactaactgccactttgtgtgtgcaagcttgcaatttaatattcatgttacaacagagatattagacttcatc |
27775853 |
T |
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