View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5150_high_4 (Length: 393)
Name: NF5150_high_4
Description: NF5150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5150_high_4 |
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| [»] scaffold0133 (1 HSPs) |
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| [»] scaffold0252 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 173 - 388
Target Start/End: Complemental strand, 8959485 - 8959256
Alignment:
| Q |
173 |
taggcattgcaatggggcggagcggggacggtttttacc---------cccaaacccaattccctgataaagccccattccccgccccgtacctcgacgt |
263 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||||| |
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| T |
8959485 |
taggcatggcaatggggcggagcggggacggtttttacctaccccatccccaaacccaattccctgataaagccccgttccccaccccgtaccccgacgg |
8959386 |
T |
|
| Q |
264 |
ggatgaataattgaacccaaaccccatcctaaatgggttcaggtatccccg-----cccccatacccgcagtggattcagatttttaataaacataatcc |
358 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8959385 |
ggatgaataattgaacccaaaccccatcccaaatgggttcgggtatccccgccccgcccccatactcgcagtggattcagatttttaataaacataatcc |
8959286 |
T |
|
| Q |
359 |
cttgacccaaactagaacatatatcatgaa |
388 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
8959285 |
cttgacccaaactagaacatatatcatgaa |
8959256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 174 - 388
Target Start/End: Original strand, 30623934 - 30624162
Alignment:
| Q |
174 |
aggcattgcaatggggcggagcggggacggtttttacc---------cccaaacccaattccctgataaagccccattccccgccccgtacctcgacgtg |
264 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||| | |
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| T |
30623934 |
aggcatggcactggggcggagcggggacggtttttacctaccccatccccaaacccaattccctgataaaaccccgttccccgccccgtaccccgacggg |
30624033 |
T |
|
| Q |
265 |
gatgaataattgaacccaaaccccatcctaaatgggttcaggtat-----ccccgcccccatacccgcagtggattcagatttttaataaacataatccc |
359 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30624034 |
gatgaataattgaacccaaaccccatcccaaatgggttcgggtatcctcgccccgcccccatacccgcagtggattcagatttttaataaatataatccc |
30624133 |
T |
|
| Q |
360 |
ttgacccaaactagaacatatatcatgaa |
388 |
Q |
| |
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|||||| |||||||||||||||||||||| |
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| T |
30624134 |
ttgaccaaaactagaacatatatcatgaa |
30624162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 173 - 388
Target Start/End: Complemental strand, 48313274 - 48313045
Alignment:
| Q |
173 |
taggcattgcaatggggcggagcggggacggtttttacc---------cccaaacccaattccctgataaagccccattccccgccccgtacctcgacgt |
263 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
48313274 |
taggcatggcactggggcggagcggggacggtttttacctaccccatccccaaacccaattccctgataaaaccccgttccccgccccgtaccccgacgg |
48313175 |
T |
|
| Q |
264 |
ggatgaataattgaacccaaaccccatcctaaatgggttcaggtatccccg-----cccccatacccgcagtggattcagatttttaataaacataatcc |
358 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48313174 |
ggatgaataattgaacccaaaccccatcccaaatgggttcgggtatccccgccccgcccccatacccgcagtggattcagatttttaataaatataatcc |
48313075 |
T |
|
| Q |
359 |
cttgacccaaactagaacatatatcatgaa |
388 |
Q |
| |
|
||||||| |||||||||||||||| ||||| |
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| T |
48313074 |
cttgaccaaaactagaacatatattatgaa |
48313045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 173 - 388
Target Start/End: Complemental strand, 18882605 - 18882376
Alignment:
| Q |
173 |
taggcattgcaatggggcggagcggggacggtttttacc---------cccaaacccaattccctgataaagccccattccccgccccgtacctcgacgt |
263 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || || |
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| T |
18882605 |
taggcatggcaatggggcggagcggggacagtttttacctaccccatccccaaacccaattccctgataaagccccgttccccgccccgtaccccggcgg |
18882506 |
T |
|
| Q |
264 |
ggatgaataattgaacccaaaccccatcctaaatgggttcaggtat-----ccccgcccccatacccgcagtggattcagatttttaataaacataatcc |
358 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18882505 |
ggatgaataattgaacccaaatcccatcccaaatgggttcgggtatccccaccccgcctccatacccgcagtggattcagatttttaataaacataatcc |
18882406 |
T |
|
| Q |
359 |
cttgacccaaactagaacatatatcatgaa |
388 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
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| T |
18882405 |
attgaaccaaactagaacatatatcatgaa |
18882376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 173 - 388
Target Start/End: Complemental strand, 3078 - 2849
Alignment:
| Q |
173 |
taggcattgcaatggggcggagcggggacggtttttacc---------cccaaacccaattccctgataaagccccattccccgccccgtacctcgacgt |
263 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
3078 |
taggcatggcaaaggggcggagcgggaacggtttttacctaccccatcctcaaacccaattccctgataaagccccgttccccgccccgtaccccgacgg |
2979 |
T |
|
| Q |
264 |
ggatgaataattgaacccaaaccccatcctaaatgggttcaggtatccccg-----cccccatacccgcagtggattcagatttttaataaacataatcc |
358 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2978 |
ggatgaataattgaacccaaaccccatcccaaatgggttcggctatccccgccccacccccatacccgcagtggattcggatttttaataaacataatcc |
2879 |
T |
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| Q |
359 |
cttgacccaaactagaacatatatcatgaa |
388 |
Q |
| |
|
||||||| |||||||||||||||| ||||| |
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| T |
2878 |
cttgacctaaactagaacatatattatgaa |
2849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 8592 - 8429
Alignment:
| Q |
15 |
tactaaaaatgaatttagatgctaagttgcatataattaagtgtttattaagattaatag-aaannnnnnnataaaatgagttatg----catgcatatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||| |
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| T |
8592 |
tactaaaaatgaatttagatgctaagttgcatataattaagtgtttattaagattaatagaaaaaaaaattataaaatgagttatgcatacatacatatt |
8493 |
T |
|
| Q |
110 |
tgatccacttaagcataaaatcagaatattatatcaaggatagtctatgttatctcttacaagt |
173 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| ||||| |||||||| |||||||||||| |
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| T |
8492 |
tgatccacttaagtataaaatcagaatattctatcgtggataatctatgttgtctcttacaagt |
8429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 449309 - 449429
Alignment:
| Q |
173 |
taggcattgcaatggggcggagcggggacggtttttacc---------cccaaacccaattccctgataaagccccattccccgccccgtacctcgacgt |
263 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| | ||||| |
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|
| T |
449309 |
taggcatggcactggggcggagcggggacggtttttacctaccccatccccaaacccaattccctgataaagccccgttccccgccccgtatcccgacgg |
449408 |
T |
|
| Q |
264 |
ggatgaataattgaacccaaa |
284 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
449409 |
ggatgaataattgaacccaaa |
449429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 34301629 - 34301585
Alignment:
| Q |
167 |
tacaagtaggcattgcaatggggcggagcggggacggtttttacc |
211 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||| ||||||| |
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|
| T |
34301629 |
tacaagtaggcatggcaatggggcggggtggggacgggttttacc |
34301585 |
T |
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