View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5150_high_5 (Length: 359)
Name: NF5150_high_5
Description: NF5150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5150_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 49 - 359
Target Start/End: Complemental strand, 56005541 - 56005236
Alignment:
| Q |
49 |
gggtaaatatccaatcaatactagtttgacactgatctagtctcaaatttgttttctcttgattttgttgaatcaacactaacaatgatcaaattactct |
148 |
Q |
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| T |
56005541 |
gggtaaatatccaatcaatactagtttgacactgatctagtctcaaatttgttttctcttgattttgttgaatcaacactaacaatgatcaaattactct |
56005442 |
T |
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| Q |
149 |
ctctctcagatataaggacctcgaattttcttaaaaatgatgacgttgtagtcagaagttttaaacaattttcgaactttgtcacatgtgacgcttcttc |
248 |
Q |
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| T |
56005441 |
ctctctcagatataaggacctcgaattttcttaaaaatgatgacgttgtagttagaagttttaaacaatttttgaactttgtcacatgtgacgcttcttc |
56005342 |
T |
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| Q |
249 |
accctataggctaagtaaatcaataaaaacaaatgcatatcaatattatataagaacagtgggaatcaaactgaccagaacagatggaaactaaatcaaa |
348 |
Q |
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| T |
56005341 |
accctataggctaagtaaatcaatgaaaacaaatgcatatcaatattatataagaacagtgggaatcaaactgac-----cagatggaaactaaatcaaa |
56005247 |
T |
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| Q |
349 |
ctcaatagtcc |
359 |
Q |
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| T |
56005246 |
ctcaatagtcc |
56005236 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 13837180 - 13837212
Alignment:
| Q |
95 |
atttgttttctcttgattttgttgaatcaacac |
127 |
Q |
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| T |
13837180 |
atttgttttctcttggttttgttgaatcaacac |
13837212 |
T |
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