View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5150_high_6 (Length: 357)
Name: NF5150_high_6
Description: NF5150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5150_high_6 |
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| [»] chr1 (4 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 357
Target Start/End: Original strand, 36525933 - 36526267
Alignment:
| Q |
25 |
atttatattatttagggactaattatatttacataatttagacttcaaattgaagtgtaagtgatagtttacggactacatcgatggtttattcttcgtt |
124 |
Q |
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| T |
36525933 |
atttatattatttagggactaattatatttacataatttagacttcaaattgaagtgtaggtgatagtttacagactacatcgatggtttattcttcgtt |
36526032 |
T |
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| Q |
125 |
ttccccacgatgctattgttactatctatattactaccgtatagagagagcaatataaaaatactggataacataaaacagatagccccccaaagtggca |
224 |
Q |
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| T |
36526033 |
ttccctgcaatgctattgttactatctatattactatcgtatagagagagcaatataaaaatactggaaaacataaaacagatagccccccaaagtggca |
36526132 |
T |
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| Q |
225 |
tatgcattgcgacgttaatgaatgtgacatgagaatgatag--nnnnnnnnnngacagaaacaaacttaactcatttcatttctaatagtagttgtaata |
322 |
Q |
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| T |
36526133 |
tatgcattgcgacgttagtgaatgtgacatgagaatgatagtttttttttttggacagaaacaaatttaactcatttcatttctaatggtagttgtaata |
36526232 |
T |
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| Q |
323 |
caagatggcatataatcatgaactcgggaactagc |
357 |
Q |
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| T |
36526233 |
caagatgacatataatcatgaactcgggaactagc |
36526267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 37923557 - 37923605
Alignment:
| Q |
309 |
tagtagttgtaatacaagatggcatataatcatgaactcgggaactagc |
357 |
Q |
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| T |
37923557 |
tagtagttttaatacaagatggcatataatcatgatcttgggaactagc |
37923605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 36533354 - 36533409
Alignment:
| Q |
197 |
ataaaacagatagccccccaaagtggcatatgcattgcgacgttaatgaatgtgac |
252 |
Q |
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| T |
36533354 |
ataaaacagataggcccccgaagtggcatctacattgcaacgttagtgaatgtgac |
36533409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 36553513 - 36553590
Alignment:
| Q |
183 |
aaatactggataacataaaacagatagccccccaaagtggcatatgcattgcgacgttaatgaatgtgacatgagaat |
260 |
Q |
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| T |
36553513 |
aaatattggacaatataaaacaaataggcccccaaagtggcatttgcattgtgacattagtggatatgacttgagaat |
36553590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 23270237 - 23270156
Alignment:
| Q |
276 |
gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagc |
357 |
Q |
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| T |
23270237 |
gacagaaacaaagttaattcatttcactattaatagcatttgtaatacaagatggcatataatcatgaacttgggaactagc |
23270156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 4431164 - 4431107
Alignment:
| Q |
276 |
gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcat |
333 |
Q |
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| T |
4431164 |
gacagaaacaaacttaactcatttcaattctaataataattgtaatacaagatggcat |
4431107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 345
Target Start/End: Complemental strand, 26917566 - 26917497
Alignment:
| Q |
276 |
gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaac |
345 |
Q |
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| T |
26917566 |
gacaaaaacaaacttaactcatttcattaataataacagtctcaatgcaagatggcatatgatcatgaac |
26917497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 29468266 - 29468338
Alignment:
| Q |
285 |
aaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagc |
357 |
Q |
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| T |
29468266 |
aaactcaactcatttcattaataatagtagttgtaatacaagatgacatgtaatcatgaacttgagaactagc |
29468338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 29443918 - 29443854
Alignment:
| Q |
281 |
aaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaac |
345 |
Q |
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| T |
29443918 |
aaacaaactcaactcatttcattaataacagtaatcgtaatacaatatgacatataatcatgaac |
29443854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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