View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5150_high_7 (Length: 356)
Name: NF5150_high_7
Description: NF5150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5150_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 13604422 - 13604611
Alignment:
| Q |
17 |
gagaacgtgttcaacaatgcaaatattgggtgagtcttttttatcgtttccctttttgattggagatatttgttggttttgtgagaagaacatggtgcac |
116 |
Q |
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| T |
13604422 |
gagaacgtgttcaacaatgcaaatattgggtgagtcttttttatcgtttccctttttgattggagatatttgttggttttgtgagaagaacatggtgcac |
13604521 |
T |
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| Q |
117 |
cagtatgaagtggaacctgatgctgaggttttggacatacttgatactgcttctagatagaaacatgtttttttaatgatcgattagtgg |
206 |
Q |
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| T |
13604522 |
cagtatgaagtggaacttgatgctgaggttttggacatacttgatactgcttctagatagaaacatgtttttttaatgatcgattagtgg |
13604611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 13604680 - 13604757
Alignment:
| Q |
275 |
ttgaggtttgacttaagtcgaattgtgtataggtgactgtggtggctaaggtatattggggtgatgcaagagagaaga |
352 |
Q |
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| T |
13604680 |
ttgaggtttgacttaagtcgaattgtgtataggtgactgtggtggctaaggtatattggggtgatgcaagagagaaga |
13604757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 24269923 - 24269825
Alignment:
| Q |
92 |
gttttgtgagaagaacatggtgcaccagtatgaagtggaacctgatgctgaggttttggacatacttgatactgcttctagatagaaacatgttttttt |
190 |
Q |
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| T |
24269923 |
gtttcgtgagaagaacgtggtgcaccagtatgaagtggaccctgatgctgaggttttggacatacttgatactgcttctagacagaaacaggttttttt |
24269825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 24269758 - 24269683
Alignment:
| Q |
275 |
ttgaggtttgacttaagtcgaattgtgtataggtgactgtggtggctaaggtatattggggtgatgcaagagagaa |
350 |
Q |
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| T |
24269758 |
ttgaggtttgacttaagttgaattgtgtataggtgactgtggtggggaaggtatactggggagatgcaagagagaa |
24269683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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