View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5150_high_8 (Length: 351)
Name: NF5150_high_8
Description: NF5150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5150_high_8 |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34899975 - 34899746
Alignment:
| Q |
1 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
100 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
34899876 |
T |
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| Q |
101 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgagaggtatgtatcttccaactacaaaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34899875 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
34899776 |
T |
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| Q |
201 |
atgtgaatttgtgcagatgatatcactgac |
230 |
Q |
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| T |
34899775 |
atgtgaatttgtgcagatgatatcactgac |
34899746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 8959317 - 8959256
Alignment:
| Q |
285 |
cagtggattcagatttttaataaacataatcccttgacccaaactagaacatatatcatgaa |
346 |
Q |
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| T |
8959317 |
cagtggattcagatttttaataaacataatcccttgacccaaactagaacatatatcatgaa |
8959256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 30624101 - 30624162
Alignment:
| Q |
285 |
cagtggattcagatttttaataaacataatcccttgacccaaactagaacatatatcatgaa |
346 |
Q |
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| T |
30624101 |
cagtggattcagatttttaataaatataatcccttgaccaaaactagaacatatatcatgaa |
30624162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 18882437 - 18882376
Alignment:
| Q |
285 |
cagtggattcagatttttaataaacataatcccttgacccaaactagaacatatatcatgaa |
346 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
18882437 |
cagtggattcagatttttaataaacataatccattgaaccaaactagaacatatatcatgaa |
18882376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 2910 - 2849
Alignment:
| Q |
285 |
cagtggattcagatttttaataaacataatcccttgacccaaactagaacatatatcatgaa |
346 |
Q |
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| T |
2910 |
cagtggattcggatttttaataaacataatcccttgacctaaactagaacatatattatgaa |
2849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 48313106 - 48313045
Alignment:
| Q |
285 |
cagtggattcagatttttaataaacataatcccttgacccaaactagaacatatatcatgaa |
346 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| |
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| T |
48313106 |
cagtggattcagatttttaataaatataatcccttgaccaaaactagaacatatattatgaa |
48313045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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