View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5151-Insertion-2 (Length: 928)
Name: NF5151-Insertion-2
Description: NF5151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5151-Insertion-2 |
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| [»] scaffold0388 (3 HSPs) |
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Alignment Details
Target: scaffold0388 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: scaffold0388
Description:
Target: scaffold0388; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Complemental strand, 8397 - 7941
Alignment:
| Q |
7 |
ataactcgacctgttaaaaagcttcatggcacccgtagttatcttacggccccatttggtaaacttcattgctggagattgagcaggacaatcaaagcga |
106 |
Q |
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| T |
8397 |
ataactcgacctgttaaaaagcttcatggcacccgtcgttatcttacggccccatttgataaacttcattgctggagattgagcaggacaatcaaagcga |
8298 |
T |
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| Q |
107 |
tgatatccacctcgaatccgggtctttttaaacaccaatctggaaacccagacaaggcgcttcccgagcttaaatccgtgaatctttgccatgttttcga |
206 |
Q |
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| T |
8297 |
tgatatccacctcgaatccgggtccttttaaacaccaatctggaaacccagacaaggcgcttcccgagcttaaatccgtgaatctttgccatgttttcga |
8198 |
T |
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| Q |
207 |
gagagcgtagaagaggaagatgatggtatgctagtgtacgatgggattcatgagaagggccacgggtttgctatggacatggcaaggcgaaactgtgtga |
306 |
Q |
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| T |
8197 |
gagagcgtagaagaggaagatgatggtatgctagtgtacgatgggattcatgagaagggccatgggtttgctatggacatggcaaggcgaaactgtgtga |
8098 |
T |
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| Q |
307 |
ggcaaatatcagagagtgaggttggtatgtttgacatgattttcaaatcaaatcaacataattaactagctagatttgcttcatggaaaaaccataaaat |
406 |
Q |
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| T |
8097 |
ggcaaatatcagatagtgaggttggtatgtttgacatgattttcaaatcaaatcaacataattaactagctagatttgattcatggaaaaaccataaaat |
7998 |
T |
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| Q |
407 |
aaaagccataaaattcaaagttgctacgcaagatttatatatttgaggttgtcttgt |
463 |
Q |
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| T |
7997 |
aaaagccatgaaattcaaagttgctacgcaagatttatatatttgaggttgtcttgt |
7941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0388; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 463 - 696
Target Start/End: Complemental strand, 7918 - 7684
Alignment:
| Q |
463 |
ttgtgtaggctat-ttgtgtttgaatttttacgagaatggaatatgggactgaaaagttcaaagtttgaatgttgaagagctgaaacgaaggttgaattt |
561 |
Q |
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| T |
7918 |
ttgtgtaggctatgttgtgtttgaatttttacgagaatgaaatatgggactgaaaagttcaaagtttgaatgttgaagagctgaaacaaaggttgaattt |
7819 |
T |
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| Q |
562 |
ttcaagtgctgagtgaggaaagtaaatgaggttaaaagggagtgactcacggttctctctagctgttgcaatttgtcaagtggagcaagagattcggggg |
661 |
Q |
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| T |
7818 |
ttcatgtgctgagtgaggaaagtacatgaggttaaaagcgagcgactcacggttctctctagctgttgcaatttgtcaagtggagcaagagattcggggg |
7719 |
T |
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| Q |
662 |
ctatctatagtaagtgccattgattttagattctc |
696 |
Q |
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| T |
7718 |
ctatctatagtaagggccatttattttagattctc |
7684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0388; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 756 - 925
Target Start/End: Complemental strand, 7622 - 7450
Alignment:
| Q |
756 |
tatatataagccatggttgaaaactaagcatattaaaaatagtctttcattc---ctgtataaaa-ctcatagacaccacaaaatataattttctctcct |
851 |
Q |
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| T |
7622 |
tatatataagccatggttgaaaactaagcatattaaaa-tagtctttcattcatactgtataaaaactcatagacaccacaaaatataattttctctcct |
7524 |
T |
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| Q |
852 |
ttatattaaaagagatttttatcccaaaaaataatcaaaataactatttcagtttcccgtttggttgggtttgg |
925 |
Q |
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| T |
7523 |
ttatattaaaagagatttttattccaaaatttaatcaaaataactatttcattttcccgtttggttgggtttgg |
7450 |
T |
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