View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5151-Insertion-4 (Length: 523)

Name: NF5151-Insertion-4
Description: NF5151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5151-Insertion-4
NF5151-Insertion-4
[»] scaffold0036 (2 HSPs)
scaffold0036 (45-397)||(50088-50440)
scaffold0036 (459-523)||(49960-50024)
[»] chr5 (5 HSPs)
chr5 (13-395)||(38015804-38016185)
chr5 (281-393)||(33013780-33013892)
chr5 (289-364)||(24539689-24539764)
chr5 (491-522)||(5682575-5682606)
chr5 (479-523)||(9024469-9024513)
[»] chr2 (9 HSPs)
chr2 (8-397)||(3395322-3395711)
chr2 (8-397)||(5788741-5789132)
chr2 (8-83)||(41754558-41754633)
chr2 (232-365)||(36720118-36720251)
chr2 (294-364)||(45658593-45658663)
chr2 (310-364)||(19994330-19994384)
chr2 (476-521)||(5788615-5788660)
chr2 (488-521)||(36720376-36720409)
chr2 (479-523)||(31966365-31966409)
[»] chr4 (8 HSPs)
chr4 (10-358)||(13228522-13228869)
chr4 (89-393)||(281829-282129)
chr4 (8-391)||(49952905-49953284)
chr4 (12-393)||(39974675-39975053)
chr4 (8-119)||(50814621-50814733)
chr4 (481-523)||(22680240-22680282)
chr4 (294-364)||(24183329-24183399)
chr4 (459-521)||(42729219-42729281)
[»] scaffold0159 (2 HSPs)
scaffold0159 (8-397)||(33114-33505)
scaffold0159 (476-521)||(32988-33033)
[»] chr1 (9 HSPs)
chr1 (8-355)||(43387011-43387357)
chr1 (459-519)||(43386857-43386917)
chr1 (306-364)||(8313295-8313353)
chr1 (481-523)||(21467472-21467514)
chr1 (178-260)||(22636325-22636407)
chr1 (487-519)||(19101070-19101102)
chr1 (487-519)||(21466090-21466122)
chr1 (479-523)||(45918731-45918775)
chr1 (479-523)||(49881311-49881355)
[»] scaffold0380 (3 HSPs)
scaffold0380 (201-397)||(14525-14721)
scaffold0380 (8-157)||(14353-14503)
scaffold0380 (464-523)||(14788-14847)
[»] chr8 (13 HSPs)
chr8 (8-310)||(13756363-13756666)
chr8 (8-310)||(23141752-23142055)
chr8 (8-310)||(42797242-42797544)
chr8 (170-397)||(10901312-10901539)
chr8 (12-393)||(21588712-21589090)
chr8 (281-396)||(15630622-15630737)
chr8 (170-279)||(45247769-45247878)
chr8 (459-519)||(10901190-10901250)
chr8 (480-523)||(19261674-19261717)
chr8 (481-523)||(361309-361351)
chr8 (481-522)||(23684340-23684381)
chr8 (460-523)||(30254965-30255027)
chr8 (479-523)||(41527540-41527584)
[»] chr6 (7 HSPs)
chr6 (41-306)||(1599542-1599808)
chr6 (8-238)||(26894731-26894961)
chr6 (269-396)||(26894969-26895100)
chr6 (248-394)||(29214156-29214302)
chr6 (481-523)||(16707635-16707677)
chr6 (459-523)||(26895166-26895230)
chr6 (487-523)||(29214017-29214053)
[»] chr3 (9 HSPs)
chr3 (103-393)||(36096033-36096319)
chr3 (180-310)||(50331915-50332045)
chr3 (8-128)||(50332065-50332186)
chr3 (481-523)||(2251236-2251278)
chr3 (480-523)||(52070-52113)
chr3 (295-364)||(9261577-9261646)
chr3 (487-519)||(20791977-20792009)
chr3 (487-519)||(30170812-30170844)
chr3 (479-523)||(50240997-50241041)
[»] scaffold0024 (1 HSPs)
scaffold0024 (201-353)||(47073-47225)
[»] scaffold0191 (1 HSPs)
scaffold0191 (300-364)||(5272-5336)
[»] chr7 (3 HSPs)
chr7 (294-364)||(6187978-6188048)
chr7 (294-364)||(6194494-6194564)
chr7 (481-522)||(36837841-36837882)
[»] scaffold0211 (1 HSPs)
scaffold0211 (479-523)||(18978-19022)


Alignment Details
Target: scaffold0036 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 45 - 397
Target Start/End: Complemental strand, 50440 - 50088
Alignment:
Q  45 ctttttctgtaatgtgttgattcacacaagtgttggctctcgaaaagtcctaatagttatatcatatccgcttcaacgtttttgtggagcagaagtggtt 144  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  |||||||||||||||    
T  50440 ctttttcagtaatgtgttgattcacacaagtgttggctctcgaaaagtcctaataatgatatcatatccgcttcaacgttttttgggagcagaagtggtt 50341  T
Q  145 cgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaagtgtcagttaaaataacacgttgaatgcaatagtagat 244  Q
    |||||||||||||||  |||| |  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50340 cgtagtggtggatcgcggacatagagagtctcgtacttaatggagagaatttaatatgtcaagtgtcagttaaaataacacgttgaatgcaatagtagat 50241  T
Q  245 gtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagccta 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50240 gtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgatgtcaatctcacttgtgtgcttgctcttagccta 50141  T
Q  345 atgttatgatacaactcaatacatgttttcacgaaagtcccaacattatgatg 397  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50140 atgttatgatacaactcaatacaggttttcacgaaagtcccaacattatgatg 50088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 459 - 523
Target Start/End: Complemental strand, 50024 - 49960
Alignment:
Q  459 gatgtcattcgctttcgagcaatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  50024 gatgtcattcactttcaagcaatttttgattcaacctcaattattttaaattccttcacttttgg 49960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 38016185 - 38015804
Alignment:
Q  13 aagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctctcgaaaagtcctaatagttatatcatatc 112  Q
    |||||||||||| ||| | || |||||||||||| |||||| ||| | | |||||||||||||| |||||| | | |||||| ||| |  ||||||||||    
T  38016185 aagatgtaacatcattattacttgtgtgattgctctttctgcaatatatcgattcacacaagtgctggctccccataagtcccaatggcgatatcatatc 38016086  T
Q  113 cgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaagtgtca 212  Q
    ||||||||| |||||||||| | |||||||||||| |||||||||||| |||||||  |||||| ||||| |||||||||  ||||| | |||||||| |    
T  38016085 cgcttcaacatttttgtggaacggaagtggttcgtggtggtggatcgtggacacaaa-agtctcatacttgatggagagatgttaatgtgtcaagtgtga 38015987  T
Q  213 gttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgatg 312  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||  ||||| ||||| ||||| |||| || |||| |||||||||||||||||||    
T  38015986 gttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgacttaagattttgggtgaagttgtgatg 38015887  T
Q  313 tcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtcccaacattatga 395  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| ||| | | |||  ||||||| ||||||||||||||    
T  38015886 tcaatctcacttgtgtgcttgcttttagcctaatgttatgatacaacccaacaaaggttcccacgaaattcccaacattatga 38015804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 393
Target Start/End: Complemental strand, 33013892 - 33013780
Alignment:
Q  281 aatgtctcaagaatttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaa 380  Q
    ||||||| ||||| |||| || | ||||||||||||||||| || |||||||||| |||| |||||||||||||||||  ||||||| |||  ||| |||    
T  33013892 aatgtcttaagaacttggatgtaattgtgatgtcaatctcacttatgtgcttgcttttagtctaatgttatgatacaatccaatacaggttcccacaaaa 33013793  T
Q  381 gtcccaacattat 393  Q
    |||||||||||||    
T  33013792 gtcccaacattat 33013780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 24539689 - 24539764
Alignment:
Q  289 aagaatttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaat 364  Q
    |||| ||||||||||| |||| ||||||||||| ||||||| ||| |||||||||||| | || ||||||| ||||    
T  24539689 aagactttgggtgaagatgtgttgtcaatctcacttgtgtggttgatcttagcctaatatgattatacaacccaat 24539764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 522
Target Start/End: Complemental strand, 5682606 - 5682575
Alignment:
Q  491 aacctcaattattttaaattccttcacttttg 522  Q
    ||||||||||||||||||||||||||||||||    
T  5682606 aacctcaattattttaaattccttcacttttg 5682575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Original strand, 9024469 - 9024513
Alignment:
Q  479 aatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||||||||||||||||||| |||||  || ||||||||    
T  9024469 aatttttcattcaacctcaattatttcaaatttatttacttttgg 9024513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 3395711 - 3395322
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctctcgaaaagtcctaatagttatatc 107  Q
    ||||||| ||||||||| |||||||| |||||||||||| |||||| || |||| ||||||||||||||||| ||| | | |||| | ||| || |||||    
T  3395711 ggatgaaaatgtaacatcattttcacttgtgtgattgctctttctgcaacgtgtcgattcacacaagtgttgtctccccataagttccaatggtgatatc 3395612  T
Q  108 atatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaag 207  Q
    |||||||||||||| |||||| |||||| ||||||||  | ||||||||||| |||||||| ||||||| |||||||||||||||  ||||| | ||| |    
T  3395611 atatccgcttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaagagtctcatacttaatggagagatgttaatgtgtcagg 3395512  T
Q  208 tgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttg 307  Q
    ||| |||||||||||||| |||||||||||||||||||| ||  |||||||||  ||||| ||||| ||||| ||||||| |||| ||||||||||||||    
T  3395511 tgtgagttaaaataacactttgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaatgtcttaagattttgggtgaagttg 3395412  T
Q  308 tgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtcccaacattatgatg 397  Q
    |||||||||||| | ||||||| ||||| ||| |||||||||| ||||||||| |||| | |||  || ||||||| ||||| |||||||    
T  3395411 tgatgtcaatcttacttgtgtgtttgcttttatcctaatgttacgatacaactgaataaaggttcccatgaaagtctcaacactatgatg 3395322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 5789132 - 5788741
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgt--tgattcacacaagtgttggctctcgaaaagtcctaatagttata 105  Q
    ||||||||||||||||| ||| |||| |||||||||||| |||||| |||||||  | |||||||||||||||||||| | | |||||  |||  | |||    
T  5789132 ggatgaagatgtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggctccccataagtctcaatgttgata 5789033  T
Q  106 tcatatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatca 205  Q
    ||||| |||||||||| |||||| | ||| |||||||||||| ||||||||||| |||||||  ||||||| ||||||||| |||||  ||||| | |||    
T  5789032 tcatacccgcttcaacatttttgggaagcggaagtggttcgtggtggtggatcgcagacacagagagtctcatacttaatgaagagatgttaatgtgtca 5788933  T
Q  206 agtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagt 305  Q
    | ||| |||||||||||||| |||||||||||||||||||| |||||||||||||  ||||| ||||  ||||| ||||||| |||| ||||||||||||    
T  5788932 aatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaagattttgggtgaagt 5788835  T
Q  306 tgtgatgtcaatctcaattgtgt--gcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtcccaacattatgatg 397  Q
    |||||||||||||| | ||||||  ||||||| | ||||||||||| ||||||||| ||||| |  ||  |||||||||| ||| |||||||||    
T  5788834 tgtgatgtcaatcttacttgtgtgcgcttgctttcagcctaatgttgtgatacaacccaataaagtttcccacgaaagtctcaaaattatgatg 5788741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 41754633 - 41754558
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctc 83  Q
    ||||||||||||||||| ||| ||||  ||||||||||| ||| || ||||||| |||||||||||| ||||||||    
T  41754633 ggatgaagatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctc 41754558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 365
Target Start/End: Original strand, 36720118 - 36720251
Alignment:
Q  232 tgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgatgtcaatctcaattgtgtgct 331  Q
    ||||||| || |||| || ||||||||||  ||||| |  || ||| | ||||||| |||| ||||||||||| |||||||||||||| | ||||||  |    
T  36720118 tgcaataatatatgttgagcaacatataagtgagatgatccatatacctaatgtctgaagactttgggtgaagatgtgatgtcaatctaatttgtgtagt 36720217  T
Q  332 tgctcttagcctaatgttatgatacaactcaata 365  Q
    ||||||||| ||||| |||  ||||| |||||||    
T  36720218 tgctcttagactaatattacaatacagctcaata 36720251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 45658593 - 45658663
Alignment:
Q  294 tttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaat 364  Q
    ||||| ||||| |||||||| ||||||||| ||||| || ||||||| ||||||| || ||||||||||||    
T  45658593 tttggatgaagatgtgatgttaatctcaatcgtgtgattactcttaggctaatgtgatcatacaactcaat 45658663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 19994384 - 19994330
Alignment:
Q  310 atgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaat 364  Q
    |||||||||||| ||||||| ||||||||||  ||||||||| ||||||| ||||    
T  19994384 atgtcaatctcacttgtgtgattgctcttagtttaatgttataatacaacccaat 19994330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 521
Target Start/End: Complemental strand, 5788660 - 5788615
Alignment:
Q  476 agcaatttttcattcaacctcaattattttaaattccttcactttt 521  Q
    |||||||||| ||| |||||| ||||||||||||| ||||||||||    
T  5788660 agcaattttttatttaacctctattattttaaatttcttcactttt 5788615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 521
Target Start/End: Original strand, 36720376 - 36720409
Alignment:
Q  488 ttcaacctcaattattttaaattccttcactttt 521  Q
    ||||||||||||||||||||||| ||||||||||    
T  36720376 ttcaacctcaattattttaaatttcttcactttt 36720409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Complemental strand, 31966409 - 31966365
Alignment:
Q  479 aatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||||||||||||||||||| |||||  || ||||||||    
T  31966409 aatttttcattcaacctcaattatttcaaatttatttacttttgg 31966365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 10 - 358
Target Start/End: Original strand, 13228522 - 13228869
Alignment:
Q  10 atgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctctcgaaaagtcctaatagttatatcat 109  Q
    ||||| ||||||||| |||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||| | | ||||   ||| || |||||||    
T  13228522 atgaaaatgtaacatcattttcacttgtgtgattgctctttctgcaatgcgttgattcacacaagtgttggctccccataagtttcaatggtgatatcat 13228621  T
Q  110 atccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaagtg 209  Q
    |||||||||||| |||||| |||||| ||||||||  | ||||||||||| ||||||||  |||||| |||||||||||||||  ||||| | |||||||    
T  13228622 atccgcttcaacatttttggggagcataagtggtttttggtggtggatcgcagacacaaaaagtctcatacttaatggagagatgttaatgtgtcaagtg 13228721  T
Q  210 tcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtg 309  Q
    | |||||||||||||| |||||||||||||||||||| ||  |||||||||  ||||| ||||| ||||| ||| ||| || | ||||||||||||||||    
T  13228722 tgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatctaat-tcttaaaattttgggtgaagttgtg 13228820  T
Q  310 atgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaa 358  Q
    |||||||||| | ||||||| ||||| ||| ||||||||||||||||||    
T  13228821 atgtcaatcttacttgtgtgtttgcttttaacctaatgttatgatacaa 13228869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 89 - 393
Target Start/End: Original strand, 281829 - 282129
Alignment:
Q  89 aagtcctaatagttatatcatatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatgga 188  Q
    |||||| ||| || ||||||||| ||||||||| |||||||||||| |||||| |  || |||||||||||  ||||| | |||||||||| ||||| ||    
T  281829 aagtcccaatggtgatatcatatacgcttcaacatttttgtggagcggaagtgctgtgtggtggtggatcgcggacacgaagagtctcgtatttaattga 281928  T
Q  189 gagaatttaatatatcaagtgtcagttaaaataacacgttgaatgc--aatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtc 286  Q
    ||||  ||||| | ||||||||  ||||||||||||| |||||| |   ||| || || | ||||||||||| |  ||||| |||||       ||||||    
T  281929 gagatgttaatgtgtcaagtgtgggttaaaataacacattgaattccatataatatatattgaacaacatattagtgagatgactca------taatgtc 282022  T
Q  287 tcaagaatttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtccca 386  Q
    |  ||| ||||| || |  |||||||||||||||| ||||||||||||| |||| |||||||||||||||||  ||||||| |||  ||| |||||||||    
T  282023 ttgagattttggatgtaactgtgatgtcaatctcatttgtgtgcttgcttttagtctaatgttatgatacaatccaatacaggttcccacaaaagtccca 282122  T
Q  387 acattat 393  Q
    |||||||    
T  282123 acattat 282129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 391
Target Start/End: Complemental strand, 49953284 - 49952905
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctctcgaa-aagtcctaatagttatat 106  Q
    ||||||||| |  |||| ||| |||| |||||| ||| |||||||| ||||| | || |||||||||||||| ||| |    |||||| ||  || ||||    
T  49953284 ggatgaagacgcgacatcattctcacttgtgtggttgttttttctgcaatgtttcgaatcacacaagtgttgtctcccccgtaagtcccaacggtgatat 49953185  T
Q  107 catatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaa 206  Q
    ||||| ||||||||| |||||| ||||| |||||| ||||| ||||||||||   ||||| | ||||||| || ||||| ||||||  ||||| | ||||    
T  49953184 catatacgcttcaacatttttggggagcggaagtgcttcgtggtggtggatcacggacacgaagagtctcatatttaattgagagatgttaatgtgtcaa 49953085  T
Q  207 gtgtcagttaaaataacacgttgaatg-ca-atagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaag 304  Q
    ||||   |||||||||||| ||||||| || ||| ||||| | |||||| ||||||  ||||| |||    |||  ||||||  |||| ||||| || |     
T  49953084 gtgtggattaaaataacacattgaatggcatataatagatattgaacaatatataagtgagatgact----tat--aatgtcataagattttggatgtaa 49952991  T
Q  305 ttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtcccaacatt 391  Q
     ||| |||||||||||| |||||||||||||||||| |||||||||||||||||  ||||||| | || ||||||||||||||||||    
T  49952990 ctgttatgtcaatctcacttgtgtgcttgctcttagtctaatgttatgatacaatccaataca-ggttccacgaaagtcccaacatt 49952905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 39974675 - 39975053
Alignment:
Q  12 gaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctctcgaa-aagtcctaatagttatatcata 110  Q
    |||||||  |||| ||| |||| |||||| ||| |||||||| ||||||| || |||||||||||||| ||| |    |||| | ||| || ||||||||    
T  39974675 gaagatgcgacatcattctcacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcata 39974774  T
Q  111 tccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaagtgt 210  Q
    | ||||||||| |||||| ||||  |||||| ||||| |||||||||||  ||||||| |||| ||||| ||||| ||||||   |||| | ||||||||    
T  39974775 tacgcttcaacatttttggggagtggaagtgcttcgtggtggtggatcgcggacacaaagagtatcgtatttaattgagagatggtaatgtgtcaagtgt 39974874  T
Q  211 cagttaaaataacacgttgaatgcaatag--tagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgt 308  Q
      ||||||||||||  |||||||| |||   ||||| | ||| ||||||| |  |  || ||||| |      || ||| |||| ||||  || |  |||    
T  39974875 gggttaaaataacatattgaatgccatataatagatattgaataacatatcagtggaatgactcata------atctcttaagattttgaatgtaactgt 39974968  T
Q  309 gatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtcccaacattat 393  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||||||  ||||||| |||  ||| |||||| |||||||||    
T  39974969 gatgtcaatctcacttgtgtgcttgcttttagtctaatgttatgatacaatccaatacaggttcccacaaaagtctcaacattat 39975053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 50814621 - 50814733
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggct-ctcgaaaagtcctaatagttatat 106  Q
    ||||||||||||||||| ||| ||||  ||||||||||| ||| || ||||||| |||||||||||| ||||||| | | | |||||| ||| || ||||    
T  50814621 ggatgaagatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtcccaatggtgatat 50814720  T
Q  107 catatccgcttca 119  Q
    |||||| ||||||    
T  50814721 catatctgcttca 50814733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 523
Target Start/End: Complemental strand, 22680282 - 22680240
Alignment:
Q  481 tttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||    
T  22680282 ttttttatttaacctcaattattttaaattccttcatttttgg 22680240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 24183399 - 24183329
Alignment:
Q  294 tttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaat 364  Q
    ||||| ||||| |||||| | ||||||| | ||||| |||||||||| ||||||| || ||||||||||||    
T  24183399 tttggatgaagatgtgatattaatctcattcgtgtggttgctcttaggctaatgtgatcatacaactcaat 24183329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 521
Target Start/End: Complemental strand, 42729281 - 42729219
Alignment:
Q  459 gatgtcattcgctttcgagcaatttttcattcaacctcaattattttaaattccttcactttt 521  Q
    ||||||||  ||||||  ||| ||||| |||||||||| ||||||||||||| ||||||||||    
T  42729281 gatgtcatctgctttcatgcattttttaattcaacctctattattttaaatttcttcactttt 42729219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 33505 - 33114
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgt--tgattcacacaagtgttggctctcgaaaagtcctaatagttata 105  Q
    ||||||||||||||||| ||| |||| |||||||||||| |||||| |||||||  | |||||||||||||||||||| | | |||||  |||  | |||    
T  33505 ggatgaagatgtaacatcattctcacttgtgtgattgctctttctgcaatgtgtcatcattcacacaagtgttggctccccataagtctcaatgttgata 33406  T
Q  106 tcatatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatca 205  Q
    ||||| |||||||||| |||||| | ||| |||||||||||| ||||||||||| |||||||  ||||||| ||||||||| |||||  ||||| | |||    
T  33405 tcatacccgcttcaacatttttgggaagcggaagtggttcgtggtggtggatcgcagacacagagagtctcatacttaatgaagagatgttaatgtgtca 33306  T
Q  206 agtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagt 305  Q
    | ||| |||||||||||||| |||||||||||||||||||| |||||||||||||  ||||| ||||  ||||| ||||||| |||| ||||||||||||    
T  33305 aatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactc--atatctaatgtcttaagattttgggtgaagt 33208  T
Q  306 tgtgatgtcaatctcaattgtgt--gcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtcccaacattatgatg 397  Q
    |||||||||||||| | ||||||  ||||||| | ||||||||||| ||||||||| ||||| |  ||  |||||||||| ||| |||||||||    
T  33207 tgtgatgtcaatcttacttgtgtgcgcttgctttcagcctaatgttgtgatacaacccaataaagtttcccacgaaagtctcaaaattatgatg 33114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 521
Target Start/End: Complemental strand, 33033 - 32988
Alignment:
Q  476 agcaatttttcattcaacctcaattattttaaattccttcactttt 521  Q
    |||||||||| ||| |||||| ||||||||||||| ||||||||||    
T  33033 agcaattttttatttaacctctattattttaaatttcttcactttt 32988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 7e-78; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 43387357 - 43387011
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctctcgaaaagtcctaatagttatatc 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  | |||||  ||||||||||||||||| || | | |||||| ||| || |||||    
T  43387357 ggatgaagatgtaacattattttcacttgtgtgattgctttttctacattgtgtcaattcacacaagtgttggatccccataagtcccaatggtgatatc 43387258  T
Q  108 atatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaag 207  Q
    ||||||| |||||| |||||  |||||| ||||||||||| ||| ||||||| ||||||   |||||||||||||||  ||||||  ||||| | |||||    
T  43387257 atatccgtttcaacattttttgggagcaaaagtggttcgtggtg-tggatcgcagacacggagagtctcgtacttaacagagagatgttaatgtgtcaag 43387159  T
Q  208 tgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttg 307  Q
    ||| ||||||||| |||| |||||||||||||||||||| ||  |||||||||  || || ||||  ||||| ||||||| |||| ||||||||||||||    
T  43387158 tgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtcttaagattttgggtgaagttg 43387059  T
Q  308 tgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgata 355  Q
    |||||||||||| | ||||||||||||| ||| |||||||||||||||    
T  43387058 tgatgtcaatcttacttgtgtgcttgcttttaacctaatgttatgata 43387011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 519
Target Start/End: Complemental strand, 43386917 - 43386857
Alignment:
Q  459 gatgtcattcgctttcgagcaatttttcattcaacctcaattattttaaattccttcactt 519  Q
    |||||||||| ||||| ||||||||||||||||||| | ||| | |||||||| |||||||    
T  43386917 gatgtcattcactttcaagcaatttttcattcaaccactattgtattaaattctttcactt 43386857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 8313353 - 8313295
Alignment:
Q  306 tgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaat 364  Q
    |||||||| ||||||| | ||||| |||||| ||||||||||| || ||||||||||||    
T  8313353 tgtgatgttaatctcactcgtgtgattgctcctagcctaatgtgatcatacaactcaat 8313295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 523
Target Start/End: Complemental strand, 21467514 - 21467472
Alignment:
Q  481 tttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||    
T  21467514 ttttttattcaacctcacttatttcaaattccttcacttttgg 21467472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 22636407 - 22636325
Alignment:
Q  178 tacttaatggagagaatttaatatatcaagtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataa 260  Q
    |||||||||||||||  ||||| | |||||||| |||||||||   || |||||||||| ||||||||| || | ||||||||    
T  22636407 tacttaatggagagatgttaatttttcaagtgtgagttaaaatttgactttgaatgcaagagtagatgttgagctacatataa 22636325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 487 - 519
Target Start/End: Complemental strand, 19101102 - 19101070
Alignment:
Q  487 attcaacctcaattattttaaattccttcactt 519  Q
    |||||||||| ||||||||||||||||||||||    
T  19101102 attcaacctccattattttaaattccttcactt 19101070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 487 - 519
Target Start/End: Complemental strand, 21466122 - 21466090
Alignment:
Q  487 attcaacctcaattattttaaattccttcactt 519  Q
    |||||||||| ||||||||||||||||||||||    
T  21466122 attcaacctccattattttaaattccttcactt 21466090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Complemental strand, 45918775 - 45918731
Alignment:
Q  479 aatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||||||||||||||||||| |||||  || ||||||||    
T  45918775 aatttttcattcaacctcaattatttcaaatttatttacttttgg 45918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Original strand, 49881311 - 49881355
Alignment:
Q  479 aatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||||||||||||||||||| |||||  || ||||||||    
T  49881311 aatttttcattcaacctcaattatttcaaatttatttacttttgg 49881355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 201 - 397
Target Start/End: Original strand, 14525 - 14721
Alignment:
Q  201 tatcaagtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggt 300  Q
    |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||  ||||| ||||| ||||  ||||||| |||| |||||||    
T  14525 tatcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataaatgagatgactcacatatttaatgtcttaagattttgggt 14624  T
Q  301 gaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtcccaacattatgatg 397  Q
    ||||||||||||||||||||| ||||||| || | ||||||| |||||||||||||||  ||||||| |||| ||||||| | ||||||||||||||    
T  14625 gaagttgtgatgtcaatctcatttgtgtgttttcacttagccaaatgttatgatacaatccaatacaggtttccacgaaaattccaacattatgatg 14721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 14353 - 14503
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggct-ctcgaaaagtcctaatagttatat 106  Q
    ||||||||||||||||||| | |||| |||||||||||  |||||  |||||||||||||||||||||||||||| ||| | ||||| |||| || ||||    
T  14353 ggatgaagatgtaacattagtctcacttgtgtgattgccctttcttcaatgtgttgattcacacaagtgttggctcctccataagtcttaatggtgatat 14452  T
Q  107 catatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggat 157  Q
    ||||||||||||||| |||||| ||||| || |||||||||  ||||||||    
T  14453 catatccgcttcaacatttttgaggagcggatgtggttcgtgatggtggat 14503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 464 - 523
Target Start/End: Original strand, 14788 - 14847
Alignment:
Q  464 cattcgctttcgagcaatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    ||||||||||||||||||  || |||||||||| ||||||||||||||||||||||||||    
T  14788 cattcgctttcgagcaataatttattcaacctctattattttaaattccttcacttttgg 14847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 13756363 - 13756666
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctctcgaa-aagtcctaatagttatat 106  Q
    ||||||||||||||||| ||| |||| |||||||||||| |||||| ||||||| |||||||||||| |||||||  |  | |||||| ||| || ||||    
T  13756363 ggatgaagatgtaacatcattatcacttgtgtgattgctctttctgcaatgtgtcgattcacacaagcgttggcttccacataagtcccaatggtgatat 13756462  T
Q  107 catatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaa 206  Q
    |||||| |||||||| |||||| ||||| |||||||| ||| ||||||||| ||||| |||| ||||||| | ||||||  ||| |  ||||| | ||||    
T  13756463 catatctgcttcaacatttttggggagcggaagtggtccgtggtggtggatagtagatacaaagagtctcatgcttaatatagatatgttaatgtgtcaa 13756562  T
Q  207 gtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagtt 306  Q
    |||| |||||||||||||| |||||||||||||||||||| ||  ||||| |||  || || |||||  |||| ||||||| |||| |||||||||||||    
T  13756563 gtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtgaaatgactcatgtatctaatgtcttaagattttgggtgaagtt 13756662  T
Q  307 gtga 310  Q
    ||||    
T  13756663 gtga 13756666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 23142055 - 23141752
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctctcgaa-aagtcctaatagttatat 106  Q
    ||||||||||||||||| ||| ||||  ||||||||||| ||| || ||||||| |||||||||||| |||||||| |  | |||||  ||| || ||||    
T  23142055 ggatgaagatgtaacatcattatcactcgtgtgattgctctttatgcaatgtgtcgattcacacaagcgttggctcccccataagtctcaatggtgatat 23141956  T
Q  107 catatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaa 206  Q
    |||||| |||||||| |||| | ||||| |||||||| ||| ||||||||| | ||| |||  ||||||| | |||||| ||||||  ||||  | ||||    
T  23141955 catatctgcttcaacattttcggggagcggaagtggtccgtggtggtggatagcagatacagagagtctcatgcttaatagagagatgttaacgtgtcaa 23141856  T
Q  207 gtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagtt 306  Q
    || | |||||||||||||| |||||||||||||||||||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||||||    
T  23141855 gtatgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataaatgagatgactcatgtatctaatgtcttaagattttgggtgaagtt 23141756  T
Q  307 gtga 310  Q
    ||||    
T  23141755 gtga 23141752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 42797544 - 42797242
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctc-tcgaaaagtcctaatagttatat 106  Q
    |||||||||||| |||| ||| ||||  ||||||||||| |||||| ||||||| |||||||||||||||| |||| ||| || |||  ||| || ||||    
T  42797544 ggatgaagatgtgacatcattatcactcgtgtgattgctctttctgcaatgtgtcgattcacacaagtgtttgctcctcgtaa-gtctcaatggtgatat 42797446  T
Q  107 catatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaa 206  Q
    |||||| |||||||| |||||| ||||| ||||||||  || ||||||||| | ||| |||  ||||||| | |||||| || |||  ||||| | ||||    
T  42797445 catatctgcttcaacatttttggggagcggaagtggtctgtggtggtggatagcagatacagagagtctcatgcttaatagaaagatgttaatgtgtcaa 42797346  T
Q  207 gtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagtt 306  Q
    |||| |||||||||||||| ||||||||||||||| |||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||||||    
T  42797345 gtgtgagttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaagtt 42797246  T
Q  307 gtga 310  Q
    ||||    
T  42797245 gtga 42797242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 170 - 397
Target Start/End: Complemental strand, 10901539 - 10901312
Alignment:
Q  170 gagtctcgtacttaatggagagaatttaatatatcaagtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataa 269  Q
    |||||||||||||||||||||||  ||||| |||||| ||| |||||||||||||| |||||||||||||||||||| ||  |||||| ||  ||||| |    
T  10901539 gagtctcgtacttaatggagagatgttaatgtatcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgagtaacatacaagtgagatga 10901440  T
Q  270 ctcaaatatcaaatgtctcaagaatttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatg 369  Q
    |||  ||||| ||||| | |||| |||||||||||||||||||||||||| | |||||||| |||| ||  |||||| ||| ||||||||  |||| | |    
T  10901439 ctcgtatatctaatgtgttaagattttgggtgaagttgtgatgtcaatcttacttgtgtgcgtgcttttgacctaatattaagatacaaccgaataaagg 10901340  T
Q  370 ttttcacgaaagtcccaacattatgatg 397  Q
    ||  ||||||||||  ||||||||||||    
T  10901339 ttcccacgaaagtcttaacattatgatg 10901312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 21589090 - 21588712
Alignment:
Q  12 gaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggctctcgaa-aagtcctaatagttatatcata 110  Q
    |||||||  |||| ||| |||| |||||| ||| |||||||| ||||||| || |||||||||||||| ||| |    |||| | ||| || ||||||||    
T  21589090 gaagatgcgacatcattctcacctgtgtggttgttttttctgcaatgtgtcgaatcacacaagtgttgtctcccccgtaagttccaatggtgatatcata 21588991  T
Q  111 tccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaagtgt 210  Q
    | |||||||||  || || |||||  ||||| ||||| |||||||||||| ||||| | |||| ||||| ||||| ||||||   |||| | ||||| ||    
T  21588990 tacgcttcaacaattatggggagcgaaagtgcttcgtggtggtggatcgtggacacgaagagtatcgtatttaattgagagatggtaatgtgtcaagggt 21588891  T
Q  211 cagttaaaataacacgttgaatg-ca-atagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgt 308  Q
      ||||||||||||| ||||||| || ||| ||||| | ||| ||||||| |  ||||| ||||| |      || ||| |||| ||||  || |  |||    
T  21588890 gggttaaaataacacattgaatgtcatataatagatattgaataacatatcagtgagatgactcata------atctcttaagattttgaatgtaactgt 21588797  T
Q  309 gatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtcccaacattat 393  Q
    ||||||||||||| || |||| ||||| |||| |||||||||||||| ||  ||||||| |||  ||| |||||| |||||||||    
T  21588796 gatgtcaatctcacttttgtgtttgcttttagtctaatgttatgatagaatccaatacaggttcccacaaaagtctcaacattat 21588712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 396
Target Start/End: Original strand, 15630622 - 15630737
Alignment:
Q  281 aatgtctcaagaatttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaa 380  Q
    |||||||  ||| ||||| ||||| |||||| | ||||||| | ||||| |||||||||| ||||||| || ||||||||||||  |   | |||| |||    
T  15630622 aatgtcttgagactttggatgaagatgtgatattaatctcactcgtgtgattgctcttaggctaatgtgatcatacaactcaatttagaatctcacaaaa 15630721  T
Q  381 gtcccaacattatgat 396  Q
    ||||||||||||||||    
T  15630722 gtcccaacattatgat 15630737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 45247769 - 45247878
Alignment:
Q  170 gagtctcgtacttaatggagagaatttaatatatcaagtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataa 269  Q
    |||||||  |||||| ||||||| |||||||| |||||||| ||||||| |   ||||||||||||| ||||  ||| |||||| ||||||  ||||| |    
T  45247769 gagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttctacgttgaatgcaaaagtatgtgttgaacaaaatataaatgagatga 45247868  T
Q  270 ctcaaatatc 279  Q
    |||| |||||    
T  45247869 ctcatatatc 45247878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 519
Target Start/End: Complemental strand, 10901250 - 10901190
Alignment:
Q  459 gatgtcattcgctttcgagcaatttttcattcaacctcaattattttaaattccttcactt 519  Q
    |||||||||| ||||| |||||||||| |||||||| | ||| | ||||||||||||||||    
T  10901250 gatgtcattcactttcaagcaattttttattcaaccactattgtattaaattccttcactt 10901190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 523
Target Start/End: Complemental strand, 19261717 - 19261674
Alignment:
Q  480 atttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||| |||||||||| ||||||||||||||||||| ||||||    
T  19261717 attttttattcaacctccattattttaaattccttcaattttgg 19261674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 523
Target Start/End: Original strand, 361309 - 361351
Alignment:
Q  481 tttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||    
T  361309 ttttttattcaacctcacttatttcaaattccttcacttttgg 361351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 522
Target Start/End: Original strand, 23684340 - 23684381
Alignment:
Q  481 tttttcattcaacctcaattattttaaattccttcacttttg 522  Q
    ||||| ||||||||||| |||||| |||||||||||||||||    
T  23684340 ttttttattcaacctcacttatttcaaattccttcacttttg 23684381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 523
Target Start/End: Original strand, 30254965 - 30255027
Alignment:
Q  460 atgtcattcgctttcgagcaa-tttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||| |||||||||| ||||| ||||| ||||||||||  |||||| ||||||||||||||||||    
T  30254965 atgttattcgctttcaagcaaattttttattcaacctc--ttatttcaaattccttcacttttgg 30255027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Complemental strand, 41527584 - 41527540
Alignment:
Q  479 aatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||||||||||||||||||| |||||  || ||||||||    
T  41527584 aatttttcattcaacctcaattatttcaaatttatttacttttgg 41527540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 41 - 306
Target Start/End: Original strand, 1599542 - 1599808
Alignment:
Q  41 attgctttttctgtaatgtgttgattcacacaagtgttggctctcgaa-aagtcctaatagttatatcatatccgcttcaacgtttttgtggagcagaag 139  Q
    |||||| |||||| ||||||| ||||||||||||| ||||||| |  | |||||| ||  || |||||||||  |||||||| |||||  ||||| ||||    
T  1599542 attgctctttctgcaatgtgtcgattcacacaagtattggctcccccataagtcccaaaggtgatatcatatatgcttcaacattttttgggagcggaag 1599641  T
Q  140 tggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaagtgtcagttaaaataacacgttgaatgcaatag 239  Q
    ||||  || ||||||||| | ||| |||  ||||||| | |||||| ||||||  ||||| | |||||||| |||||||||||||| |||||||||||||    
T  1599642 tggtatgtggtggtggatagcagatacagagagtctcatgcttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatag 1599741  T
Q  240 tagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagtt 306  Q
    ||||||| ||  |||||||||  ||||| |||||  |||| ||||||| |||| |||||||||||||    
T  1599742 tagatgttgagaaacatataagtgagatgactcatgtatctaatgtcttaagattttgggtgaagtt 1599808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 26894731 - 26894961
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggct-ctcgaaaagtcctaatagttatat 106  Q
    ||||||||||| ||||| ||| |||  ||||||||| || |||||| |||||||  |||||||||| |||||||| | | | |||||| |||| | ||||    
T  26894731 ggatgaagatgaaacat-attctcatttgtgtgatttctctttctgcaatgtgtgtattcacacaactgttggctaccccataagtcccaataatgatat 26894829  T
Q  107 catatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatatatcaa 206  Q
     |||||| ||||||| |||| | ||||  |||||||||| | ||||||||| | ||||||    |||||| |||||||||||||||  ||||||||||||    
T  26894830 aatatccacttcaacattttaggggagtggaagtggttcatggtggtggattgcagacacggatagtctcatacttaatggagagatgttaatatatcaa 26894929  T
Q  207 gtgtcagttaaaataacacgttgaatgcaata 238  Q
    |||| | |||||||||||| ||| ||||||||    
T  26894930 gtgtgatttaaaataacacattggatgcaata 26894961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 396
Target Start/End: Original strand, 26894969 - 26895100
Alignment:
Q  269 actcaaatatcaaatgtctcaagaatttgggtgaagttgtgatgtcaatctcaattgtgtgc----ttgctcttagcctaatgttatgatacaactcaat 364  Q
    ||||||||||| ||||||  |||| |||||||||||||||||| ||| | ||| |||| |||    |||||||| ||||||| |||||||||||| ||||    
T  26894969 actcaaatatctaatgtcataagattttgggtgaagttgtgatatcattatcatttgtatgcatgtttgctctttgcctaattttatgatacaacccaat 26895068  T
Q  365 acatgttttcacgaaagtcccaacattatgat 396  Q
     || |||  ||||||||||| |||||| ||||    
T  26895069 gcaggttcccacgaaagtccaaacattttgat 26895100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 394
Target Start/End: Complemental strand, 29214302 - 29214156
Alignment:
Q  248 gaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatg 347  Q
    |||||||||| ||  ||||| ||||| ||| | | ||||| |||| ||||| ||||| ||||||   ||||||| || |||| ||||||||||| |||||    
T  29214302 gaacaacatacaagtgagatgactcatatacctattgtcttaagactttggatgaagatgtgataataatctcacttatgtggttgctcttagcgtaatg 29214203  T
Q  348 ttatgatacaactcaatacatgttttcacgaaagtcccaacattatg 394  Q
    | |||||||||||||||  | |||  |||||||||| ||||||||||    
T  29214202 taatgatacaactcaatgtaggttcacacgaaagtctcaacattatg 29214156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 523
Target Start/End: Original strand, 16707635 - 16707677
Alignment:
Q  481 tttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||||||||| ||||||| |||||| |||||||||||    
T  16707635 tttttcattcaacctctattatttcaaattctttcacttttgg 16707677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 26895166 - 26895230
Alignment:
Q  459 gatgtcattcgctttcgagcaatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    ||||||||||| | || || || |||| |||||||||| ||||||||| ||||||||| ||||||    
T  26895166 gatgtcattcgttatcaagtaactttttattcaacctctattattttatattccttcagttttgg 26895230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 487 - 523
Target Start/End: Complemental strand, 29214053 - 29214017
Alignment:
Q  487 attcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  29214053 attcaacctcaattatttcaaatttcttcacttttgg 29214017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 103 - 393
Target Start/End: Original strand, 36096033 - 36096319
Alignment:
Q  103 atatcatatccgcttcaacgtttttgtggagcagaagtggttcgtagtggtggatcgtagacacaatgagtctcgtacttaatggagagaatttaatata 202  Q
    ||||||||| ||||||||| |||||| ||||| |||||| ||||| |||||||||||  ||||| | |||| ||||| ||||| |||||| | |||| |     
T  36096033 atatcatatacgcttcaacatttttggggagcggaagtgcttcgtggtggtggatcgcggacacgaagagtatcgtatttaattgagagattgtaatgtg 36096132  T
Q  203 tcaagtgtcagttaaaataacacgttgaatgcaatagta--gatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggt 300  Q
    ||||||||  |||||||||| || |||||||| |||  |  ||| | ||| ||||||| |  ||||| ||||| |      || ||| |||| ||||  |    
T  36096133 tcaagtgtgggttaaaataatacattgaatgccatataattgatattgaataacatatcaatgagatgactcata------atctcttaagattttgaat 36096226  T
Q  301 gaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaatacatgttttcacgaaagtcccaacattat 393  Q
    | |  || ||||||||||||| ||||||||||||| |||| |||||||||||||||||  ||||||| |||  ||| ||||||||||||||||    
T  36096227 gtaactgcgatgtcaatctcacttgtgtgcttgcttttagtctaatgttatgatacaatccaatacaggttcccacaaaagtcccaacattat 36096319  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 180 - 310
Target Start/End: Complemental strand, 50332045 - 50331915
Alignment:
Q  180 cttaatggagagaatttaatatatcaagtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatc 279  Q
    |||||| ||||||  ||||| | |||||||| |||||||||||||| |||||||||||||||||||| ||  |||||||||  ||||| |||||  ||||    
T  50332045 cttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatgtatc 50331946  T
Q  280 aaatgtctcaagaatttgggtgaagttgtga 310  Q
     ||||||| |||| |||||||||||||||||    
T  50331945 taatgtcttaagattttgggtgaagttgtga 50331915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 50332186 - 50332065
Alignment:
Q  8 ggatgaagatgtaacattattttcacgtgtgtgattgctttttctgtaatgtgttgattcacacaagtgttggct-ctcgaaaagtcctaatagttatat 106  Q
    ||||||||||||||||| ||| ||||  ||||||||||| |||||| ||||||  |||||||||||| ||||||| | | | |||||| ||| || ||||    
T  50332186 ggatgaagatgtaacatcattatcactcgtgtgattgctctttctgcaatgtgacgattcacacaagcgttggctcccccataagtcccaatggtgatat 50332087  T
Q  107 catatccgcttcaacgtttttg 128  Q
    |||||| |||||||| ||||||    
T  50332086 catatctgcttcaacatttttg 50332065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 523
Target Start/End: Original strand, 2251236 - 2251278
Alignment:
Q  481 tttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  2251236 ttttttattcaacctcaattatttcaaattccttcacttttgg 2251278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 523
Target Start/End: Original strand, 52070 - 52113
Alignment:
Q  480 atttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||| |||||||||| ||||||||||||||||||| ||||||    
T  52070 attttttattcaacctccattattttaaattccttcaattttgg 52113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 9261577 - 9261646
Alignment:
Q  295 ttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaat 364  Q
    |||| ||||| |||||| | ||||||| | ||||| |||||||||| ||||||| || ||||||||||||    
T  9261577 ttggatgaagatgtgatattaatctcactcgtgtgattgctcttaggctaatgtaatcatacaactcaat 9261646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 487 - 519
Target Start/End: Original strand, 20791977 - 20792009
Alignment:
Q  487 attcaacctcaattattttaaattccttcactt 519  Q
    |||||||||| ||||||||||||||||||||||    
T  20791977 attcaacctccattattttaaattccttcactt 20792009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 487 - 519
Target Start/End: Complemental strand, 30170844 - 30170812
Alignment:
Q  487 attcaacctcaattattttaaattccttcactt 519  Q
    |||||||||| ||||||||||||||||||||||    
T  30170844 attcaacctccattattttaaattccttcactt 30170812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Original strand, 50240997 - 50241041
Alignment:
Q  479 aatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||||||||||||||||||| |||||  || ||||||||    
T  50240997 aatttttcattcaacctcaattatttcaaatttatttacttttgg 50241041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 47225 - 47073
Alignment:
Q  201 tatcaagtgtcagttaaaataacacgttgaatgcaatagtagatgtagaacaacatataaccgagataactcaaatatcaaatgtctcaagaatttgggt 300  Q
    |||||||||| ||||||| |  ||||||| ||| |||||||||||| |||||||||||||  ||||| || || ||| |  |||||| |||| |||||||    
T  47225 tatcaagtgtgagttaaagtttcacgttgtatggaatagtagatgttgaacaacatataagtgagatgacacacatacctcatgtcttaagactttgggt 47126  T
Q  301 gaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatga 353  Q
    |||| |||| |||||||| |   |||||| |||||||||| ||||||| ||||    
T  47125 gaagatgtggtgtcaatcgcgcatgtgtggttgctcttaggctaatgtgatga 47073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 5272 - 5336
Alignment:
Q  300 tgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaat 364  Q
    ||||| |||||||| ||||||| | ||||| |||||||||||||||||| || ||||||||||||    
T  5272 tgaaggtgtgatgttaatctcactcgtgtgattgctcttagcctaatgtgatcatacaactcaat 5336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 6187978 - 6188048
Alignment:
Q  294 tttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaat 364  Q
    ||||| ||||| |||||| | ||||||| | ||||| |||||||||| ||||||| || ||||||||||||    
T  6187978 tttggatgaagatgtgatattaatctcactcgtgtgattgctcttaggctaatgtgattatacaactcaat 6188048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 6194494 - 6194564
Alignment:
Q  294 tttgggtgaagttgtgatgtcaatctcaattgtgtgcttgctcttagcctaatgttatgatacaactcaat 364  Q
    ||||| ||||| |||||| | ||||||| | ||||| |||||||||| ||||||| || ||||||||||||    
T  6194494 tttggatgaagatgtgatattaatctcactcgtgtgattgctcttaggctaatgtgattatacaactcaat 6194564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 522
Target Start/End: Complemental strand, 36837882 - 36837841
Alignment:
Q  481 tttttcattcaacctcaattattttaaattccttcacttttg 522  Q
    |||||||||| ||||| ||||||||||| |||||||||||||    
T  36837882 tttttcattctacctctattattttaaagtccttcacttttg 36837841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 479 - 523
Target Start/End: Complemental strand, 19022 - 18978
Alignment:
Q  479 aatttttcattcaacctcaattattttaaattccttcacttttgg 523  Q
    |||||||||||||||||||||||||| |||||  || ||||||||    
T  19022 aatttttcattcaacctcaattatttcaaatttatttacttttgg 18978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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