View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5151-Insertion-8 (Length: 120)
Name: NF5151-Insertion-8
Description: NF5151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5151-Insertion-8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 7e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 28654867 - 28654754
Alignment:
| Q |
7 |
agcagaaagagcgacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttcacatacttgaaatttctcatccca |
106 |
Q |
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| T |
28654867 |
agcagaaagagcaacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttcacatacttgaaatttctcatccca |
28654768 |
T |
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| Q |
107 |
aaacttcttaccga |
120 |
Q |
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| T |
28654767 |
aaacttcttaccga |
28654754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 28635586 - 28635473
Alignment:
| Q |
7 |
agcagaaagagcgacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttcacatacttgaaatttctcatccca |
106 |
Q |
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|||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
28635586 |
agcagatagagcgacaatgtcagcgcatgacactgtcaagggacattctttctcgacagctgctttgatggtattcacatacttgaaatttctcatccca |
28635487 |
T |
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| Q |
107 |
aaacttcttaccga |
120 |
Q |
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| T |
28635486 |
aaacttctcaccga |
28635473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 28605418 - 28605311
Alignment:
| Q |
7 |
agcagaaagagcgacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttcacatacttgaaatttctcatccca |
106 |
Q |
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|||||||||||| ||||| ||||| |||||||||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
28605418 |
agcagaaagagcaacaatgtcagcgcatgacactgtcaaaggacattctttttcaagagcagctttgatggtgctcacatacttgaagtttctcatccca |
28605319 |
T |
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| Q |
107 |
aaacttct |
114 |
Q |
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|||||||| |
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| T |
28605318 |
aaacttct |
28605311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 28663265 - 28663162
Alignment:
| Q |
11 |
gaaagagcgacaatatcagcacatgacactgtcaagggacattctttctcaacagcagctttgatggtgttcacatacttgaaatttctcatcccaaaac |
110 |
Q |
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|||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||| |||||| ||| |
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| T |
28663265 |
gaaagagcaacaatgtcggcacatgatactgtcaagggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaac |
28663166 |
T |
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| Q |
111 |
ttct |
114 |
Q |
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|||| |
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| T |
28663165 |
ttct |
28663162 |
T |
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