View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5151_high_4 (Length: 233)
Name: NF5151_high_4
Description: NF5151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5151_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 7095579 - 7095788
Alignment:
| Q |
1 |
gaatcaaatcttcaatacagatgataccgtgcttcccaagaacctgcccattgtataatgtcagtcaaagaatagaaagataaacagtcagtgtaaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
7095579 |
gaatcaaatcttcaatacagatgataccgtgcttcccaagaacctgcccattgtataatgtcagtcaaaaaatagaaaaataaacagtcagtgtaaatgt |
7095678 |
T |
|
| Q |
101 |
tcatgttcaacaacactatacacagaatctggactgtcgaatcaataaattgaaaatgaaatcaagaaatatatgttagaatattttaggaattggagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7095679 |
------tcaacaacactatacacagaatctggactgttgaatcaataaattgaaaatgaaatcaaaaaatatatgttagaatattttaggaattggagat |
7095772 |
T |
|
| Q |
201 |
ctataccatatcaatt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7095773 |
ctataccatatcaatt |
7095788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 7105409 - 7105547
Alignment:
| Q |
1 |
gaatcaaatcttcaatacagatgataccgtgcttcccaagaacctgcccattgtataatgtcagtcaaagaatagaaagataaacagtcagtgtaaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7105409 |
gaatcaaatcttcaatacagatgataccgtgcttcccaagaacctgcccattgtataatgtcagtcaaagaatagaaaaataaacagtcagtgtaa---- |
7105504 |
T |
|
| Q |
101 |
tcatgttcaacaacactatacacagaatctggactgtcgaatcaa |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7105505 |
--atgttcaacaacactatacacagaatctggactgttgaatcaa |
7105547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 7585350 - 7585292
Alignment:
| Q |
156 |
atgaaatcaagaaatatatgttagaatattttaggaattggagatctataccatatcaatt |
216 |
Q |
| |
|
||||||||||||||| ||||||| | |||| |||||||||||||| |||||||||||||| |
|
|
| T |
7585350 |
atgaaatcaagaaatctatgttaaagtatt--aggaattggagatccataccatatcaatt |
7585292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University