View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5151_low_1 (Length: 305)
Name: NF5151_low_1
Description: NF5151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5151_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 9258371 - 9258643
Alignment:
| Q |
16 |
agatgaaaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9258371 |
agatgaaaaactatcccggcaaaaaacatacagaggatcatcatacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaa |
9258470 |
T |
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| Q |
116 |
acaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcatactgtgacatataaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9258471 |
acaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcataccgtgacatataaa |
9258570 |
T |
|
| Q |
216 |
gagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9258571 |
gagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgt |
9258643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 9268379 - 9268635
Alignment:
| Q |
16 |
agatgaaaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaa |
115 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9268379 |
agatgcaaaactatcccggcaaaaaacatacagacgatcatcggacttacaccctgtccttctaagcaattcacaaaactccaataacacttcaaggtaa |
9268478 |
T |
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| Q |
116 |
acaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcatactgtgacatataaa |
215 |
Q |
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| T |
9268479 |
acaccctgcaactttttgtccttcgaatttaagcaaattttcacaaaatccttaatcacagaataagcaatacgcccatttgc------------ataaa |
9268566 |
T |
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| Q |
216 |
gagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaat |
284 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9268567 |
gatctaccaacagtgaaggaatttccataaacatggaaacagaaaaatattcagaatcattgatgtaat |
9268635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 152
Target Start/End: Original strand, 9250306 - 9250436
Alignment:
| Q |
22 |
aaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaaacaccc |
121 |
Q |
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||||| |||||| ||| ||||||||| ||||| ||| ||||||||| | ||| |||||||||||||||||||||||| ||||||| |||||| ||| | |
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| T |
9250306 |
aaaaccatcccgacaacaaacatacaaaggatgatcacacttacaccctacccctctaagcaattcacaaaactccaacaacacttctaggtaagcactc |
9250405 |
T |
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| Q |
122 |
tgcaactttttgtccttcaaatctaaacaaa |
152 |
Q |
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|||||| ||||| ||||||||||||||||| |
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| T |
9250406 |
tgcaacgttttgcacttcaaatctaaacaaa |
9250436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 9237782 - 9237914
Alignment:
| Q |
22 |
aaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaaacaccc |
121 |
Q |
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||||| |||||| ||| ||||||||| ||| ||||| || || | | | ||| |||||||||||||||||| ||||| | | ||||||||| | |||| |
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| T |
9237782 |
aaaaccatcccgacaagaaacatacaaaggctcatcacacgtaaaacctacccctctaagcaattcacaaaaatccaacaaaatttcaaggtagaaaccc |
9237881 |
T |
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| Q |
122 |
tgcaactttttgtccttcaaatctaaacaaatt |
154 |
Q |
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|||||||||||| ||||||||||||||||||| |
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| T |
9237882 |
tgcaactttttgcacttcaaatctaaacaaatt |
9237914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 9237969 - 9238031
Alignment:
| Q |
206 |
gacatataaagagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattca |
268 |
Q |
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||||||||||| ||||||||||| |||||||||| ||| ||| |||||| | ||||||||||| |
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| T |
9237969 |
gacatataaagtgctaccaacagagaaggaattttcattaacttgaaaaaataaaaatattca |
9238031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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