View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5152-Insertion-1 (Length: 1057)
Name: NF5152-Insertion-1
Description: NF5152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5152-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 48 - 651
Target Start/End: Complemental strand, 46811272 - 46810672
Alignment:
| Q |
48 |
caatactttactcacacaaatcacagccccctgcctctatagtggttctagtcattcaatgtcttttttctcttcacatttaattattgtttcagtttga |
147 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46811272 |
caatactttactcacacaaatcacagccccctgcctctatagtggttctagtcattcaatgtcttttttctcttcacatttaattattgtttcagtttga |
46811173 |
T |
|
| Q |
148 |
gtgtatgattatgcttgatcaatgtatgattagttataggttacaacataattgagttgaagctcggaaatatgattaattaatctaaaattgaaaatag |
247 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
46811172 |
gtgtatgattatgcttgatcaatgtatgattagttataggtttca---taattgagttgaagctgggaaatatgattaattaatctaaaattggaaatag |
46811076 |
T |
|
| Q |
248 |
gtaaccaattgataatctatctttaattaaattgagtttagtttgatctttgaaaaagatcagttgagctttcagccgaataaattatacgatgtggcga |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
46811075 |
gtaaccaattgataatctatctttaattaaattgagtttagtttgatctttgaaaaagatcagttgggctttcagccgaacaaattatacgatgtggcga |
46810976 |
T |
|
| Q |
348 |
aggagacataacaaattggttgtaattgttaatattgattgttcatatatagcaatgtgttcttaagtggatcatcccctatacagagagagatcggaca |
447 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46810975 |
aggagacataacaaattggttgtaattgttactattgattgttca--tatagcaatgtgttcttaaatggatcatcccctatacagagagagatcggaca |
46810878 |
T |
|
| Q |
448 |
ctaggcactggtacccaacatcttgaaatagtagttggaaatagtttatgaacacacaattatgttgagttattcattctcacataatgaaacacaaaac |
547 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
46810877 |
ctaggtactggtacccaacatcttgaaatagtagttggaaatagtttatgaacacacaattatgctgagttattcattctcacataatgaaacacaagac |
46810778 |
T |
|
| Q |
548 |
--ttttattcatagcagaaagtggagctcaagttattatagttactagagcctgcatgtacattcttcactcattatgagttacctagctcttacatctt |
645 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46810777 |
ttttttattcatagcagaaagtggagctcaagttattatagttactagagcctgcatgtacattcttcactcattatgagatacctagctcttacatctt |
46810678 |
T |
|
| Q |
646 |
acatgc |
651 |
Q |
| |
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|||||| |
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| T |
46810677 |
acatgc |
46810672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 685 - 1034
Target Start/End: Complemental strand, 46810641 - 46810287
Alignment:
| Q |
685 |
ctcagtacaaagtgctcaaaattgataacagaggaccctttcttttctggcttccttcctccctttgttgaggttgagcatttgcaaagtaagattgtct |
784 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810641 |
ctcagtacaaagtgctcaaaattgataacagaggaccctttcttttctggcttccttcctccctttgttgaggttgagcatttgcaaagtaagattgtct |
46810542 |
T |
|
| Q |
785 |
ttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctcttttactggcctttctatttgacttatcacattgtcatcctcacct |
884 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810541 |
ttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctcttttactggcctttctatttgacttatcacattgtcatcctcacct |
46810442 |
T |
|
| Q |
885 |
ttagaatttcattcaccaaataaaaaagtaccatagttaaatattttctatatattcaactaagcataacataatcaatcaatatttaaatttag-tatg |
983 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46810441 |
ttaaaatttcattcaccaaataaaaaagtaccatagttaaatattttctatatcttcaactaagcataacataatcaatcaatatttaaatttagttatg |
46810342 |
T |
|
| Q |
984 |
-tacatagtatacctgc-agaaagtttctctgattg-tctcagca-tgataccaa |
1034 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |
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| T |
46810341 |
ttacatagtatacctgcaagaaagtttctctgattgttctcagcattgataccaa |
46810287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 4e-38; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 744 - 885
Target Start/End: Complemental strand, 30287257 - 30287116
Alignment:
| Q |
744 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
843 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| |||||||| | |
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| T |
30287257 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctacctctttca |
30287158 |
T |
|
| Q |
844 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
885 |
Q |
| |
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|||| || |||||||| |||||||||||||| |||||||||| |
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| T |
30287157 |
ctggtctctctatttggcttatcacattgtcctcctcacctt |
30287116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 744 - 885
Target Start/End: Complemental strand, 30300133 - 30299992
Alignment:
| Q |
744 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
843 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| |||||||| | |
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| T |
30300133 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctacctctttca |
30300034 |
T |
|
| Q |
844 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
885 |
Q |
| |
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|||| || |||||||| |||||||||||||| |||||||||| |
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| T |
30300033 |
ctggtctctctatttggcttatcacattgtcttcctcacctt |
30299992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 744 - 885
Target Start/End: Complemental strand, 30315791 - 30315650
Alignment:
| Q |
744 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
843 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| |||||||| | |
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| T |
30315791 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctacctctttca |
30315692 |
T |
|
| Q |
844 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
885 |
Q |
| |
|
|||| || |||||||| |||||||||||||| |||||||||| |
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| T |
30315691 |
ctggtctctctatttggcttatcacattgtcttcctcacctt |
30315650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 744 - 885
Target Start/End: Complemental strand, 30292291 - 30292150
Alignment:
| Q |
744 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
843 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| | |||||| | |
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| T |
30292291 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctagctctttca |
30292192 |
T |
|
| Q |
844 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
885 |
Q |
| |
|
|||| || | ||||| |||||||||||||| |||||||||| |
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|
| T |
30292191 |
ctggtctctgaatttggcttatcacattgtcctcctcacctt |
30292150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 744 - 885
Target Start/End: Complemental strand, 30304925 - 30304784
Alignment:
| Q |
744 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctcttcagcagatccagggaatgcaacctctttta |
843 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || ||||| |||| ||| |||||||||||||| | |||||| | |
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| T |
30304925 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctgatccagggaatgctagctctttca |
30304826 |
T |
|
| Q |
844 |
ctggcctttctatttgacttatcacattgtcatcctcacctt |
885 |
Q |
| |
|
|||| || | ||||| |||||||||||||| |||||||||| |
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|
| T |
30304825 |
ctggtctctgaatttggcttatcacattgtcctcctcacctt |
30304784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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