View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5152-Insertion-2 (Length: 913)

Name: NF5152-Insertion-2
Description: NF5152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5152-Insertion-2
NF5152-Insertion-2
[»] chr1 (7 HSPs)
chr1 (31-846)||(49690434-49691238)
chr1 (7-694)||(49678949-49679628)
chr1 (17-694)||(49686316-49686986)
chr1 (853-913)||(2478378-2478439)
chr1 (802-854)||(49678768-49678820)
chr1 (877-913)||(48388158-48388195)
chr1 (853-909)||(51494526-51494583)
[»] chr4 (12 HSPs)
chr4 (853-913)||(3618503-3618564)
chr4 (853-908)||(16175070-16175126)
chr4 (853-913)||(6290561-6290622)
chr4 (848-913)||(34199319-34199385)
chr4 (853-913)||(3533357-3533418)
chr4 (873-913)||(16020828-16020869)
chr4 (853-913)||(28899293-28899354)
chr4 (853-909)||(52772715-52772772)
chr4 (853-908)||(48506661-48506717)
chr4 (850-913)||(56053975-56054039)
chr4 (848-913)||(8991739-8991805)
chr4 (861-913)||(23540476-23540529)
[»] chr3 (14 HSPs)
chr3 (853-913)||(32120488-32120549)
chr3 (853-913)||(44084271-44084332)
chr3 (853-913)||(4045942-4046003)
chr3 (853-913)||(7008017-7008078)
chr3 (853-913)||(29701644-29701705)
chr3 (853-913)||(42560863-42560924)
chr3 (853-913)||(36178754-36178816)
chr3 (853-913)||(30418479-30418540)
chr3 (853-913)||(50415880-50415941)
chr3 (853-913)||(51999287-51999348)
chr3 (847-909)||(38572208-38572271)
chr3 (877-913)||(6048746-6048783)
chr3 (853-913)||(43473852-43473913)
chr3 (853-913)||(46572975-46573036)
[»] chr8 (4 HSPs)
chr8 (853-913)||(35931822-35931883)
chr8 (853-913)||(1958230-1958291)
chr8 (853-913)||(43525139-43525200)
chr8 (853-913)||(45101075-45101136)
[»] chr2 (6 HSPs)
chr2 (853-913)||(7588555-7588616)
chr2 (853-908)||(44279954-44280010)
chr2 (848-908)||(1073139-1073200)
chr2 (877-913)||(22351665-22351702)
chr2 (853-913)||(36526783-36526844)
chr2 (877-913)||(43021727-43021764)
[»] chr6 (3 HSPs)
chr6 (853-910)||(30446204-30446262)
chr6 (853-913)||(8660519-8660580)
chr6 (853-913)||(34838541-34838602)
[»] chr7 (4 HSPs)
chr7 (853-913)||(36518476-36518537)
chr7 (854-913)||(37951709-37951769)
chr7 (853-913)||(28318093-28318154)
chr7 (853-913)||(33078835-33078896)
[»] chr5 (5 HSPs)
chr5 (853-909)||(19241276-19241333)
chr5 (853-913)||(27942451-27942512)
chr5 (853-913)||(32976626-32976687)
chr5 (853-913)||(40888854-40888915)
chr5 (853-913)||(42317848-42317909)


Alignment Details
Target: chr1 (Bit Score: 577; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 31 - 846
Target Start/End: Complemental strand, 49691238 - 49690434
Alignment:
Q  31 atgacattggtgacagatatatgaaggtttgaactgaaaggttatttgatcagctaagaatggaaatggattgccggaaagtgcaaagcctaattcattg 130  Q
    |||||| || ||||||  |||||||| || |||||||||||| |||| || || ||| || |||||||| || |||||||||||||||||||||||||||    
T  49691238 atgacactgttgacagtcatatgaagattggaactgaaaggtaatttcattagttaaaaagggaaatgggttaccggaaagtgcaaagcctaattcattg 49691139  T
Q  131 acaggaagatgcaatgacgaacaggacacgaaagagtggttggactcatcatcaaatattgaatcgccaaagtaaaaatcatagggatgacaagaactat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49691138 acaggaagatgcaatgacgaacaggacacgaaagagtggttggactcatcatcaaatattgaatcgccaaagtaaaaatcatagggatgacaagaactat 49691039  T
Q  231 ttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcatnnnnnnnngttccaaaaggag 330  Q
    || ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  49691038 ttatgaagaaattacttggagggtgaatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcataaaaaaa-gttccaaaaggag 49690940  T
Q  331 aggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaatagggttgcc 430  Q
     || ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49690939 tgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaatagtgttgcc 49690840  T
Q  431 aatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttttgttgagattatcacaacct 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49690839 aatggaccagtgattatcaatctttttaacttggaagagttttcctcttttggttaactggacatacttcatagcagttttgttgagattatcacaacct 49690740  T
Q  531 tgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatcatcac 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| |||||||||||| |||    
T  49690739 tgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaaaaaacccaagatttccacaaccaaatgagtctggacaatcaccac 49690640  T
Q  631 tgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattca 730  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49690639 tgtgtccatttcctttcctagttaagacaagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattca 49690540  T
Q  731 actgtgtgtgttaaacaatttgttccacacttgttaatttcattgcataaatataaatatatcctttaaatccaattgacacgctggttgacttggaaaa 830  Q
    |     |||||||||||||||||||||||||| |||||    |||||   | |||||||||| |||| || | |||||||||||| ||||||||||||||    
T  49690539 a----ttgtgttaaacaatttgttccacactt-ttaat----ttgca-cgacataaatatattctttgaagcaaattgacacgctagttgacttggaaaa 49690450  T
Q  831 tgagtaccacacaagt 846  Q
    ||||||||||||||||    
T  49690449 tgagtaccacacaagt 49690434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 7 - 694
Target Start/End: Complemental strand, 49679628 - 49678949
Alignment:
Q  7 acaattaacatttttatcacggtaatgacattggtgacagatatatgaaggtttgaactgaaaggttatttgatcagctaagaatggaaatggattgccg 106  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  49679628 acaattaatatttttatcacggtaatgacattggtgaaagatatatgaaggtttgaactgaaaggttatttgatcatctaagaatggaaatggattgccg 49679529  T
Q  107 gaaagtgcaaagcctaattcattgacaggaagatgcaatgacgaacaggacacgaaagagtggttggactcatcatcaaatattgaatcgccaaagtaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49679528 gaaagtgcaaagcctaattcattgacaggaagatgcaatgacgaacaggacacgaaagagtggttggactcatcatcaaatattgaatcgccaaagtaaa 49679429  T
Q  207 aatcatagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagttttt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49679428 aatcatagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtacggttgcatttgaaagctgttatgtagttttt 49679329  T
Q  307 catnnnnnnnngttccaaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggg 406  Q
    |||        ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49679328 cataaaaaaaagttccaaaaggagaggaaggaaggagtgtaatattaacatggctgaatgcctcacaagcattcttctccaaaagcttggtgatattggg 49679229  T
Q  407 gtcaataatggaaatagggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagca 506  Q
    ||||||||||||||||| |||||||||||||| | |||||||||| ||| ||||||| ||||||||||| | |||| |||||||||| | ||||||||||    
T  49679228 gtcaataatggaaatagtgttgccaatggacccgcgattatcaatgtttgtaacttgaaagagttttcctcctttggttaactggacgtgcttcatagca 49679129  T
Q  507 gttttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaat 606  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||        |||||||||    
T  49679128 gttttgttgagattatcacaaccttgaattgccaatgtaccacagcttgggaattcaactgttgtaaaagggtatttaatcaa--------ttccacaat 49679037  T
Q  607 caaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49679036 caaatgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag 49678949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 694
Target Start/End: Complemental strand, 49686986 - 49686316
Alignment:
Q  17 tttttatcacggtaatgacattggtgacagatatatgaaggtttgaactgaaaggttatttgatcagctaagaatggaaatggattgccggaaagtgcaa 116  Q
    |||||||||||||||| ||| ||  ||||   |||||||| |||||| | |||||| |||| ||||||||| ||| ||||||| || || ||||||||||    
T  49686986 tttttatcacggtaataacactgtcgacaataatatgaagatttgaaattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaa 49686887  T
Q  117 agcctaattcattgacaggaagatgcaatgacgaacaggacacgaaagagtggttggactcatcatcaaatattg---aatcgccaaagtaaaaatcata 213  Q
    | ||||||| | ||||||||||||| || |   ||||||||  |||||||||||||| |||||||| | ||||||   |||| || ||||||||||||||    
T  49686886 aacctaatttaatgacaggaagatgaaacggaaaacaggacgtgaaagagtggttgggctcatcattagatattgttgaatcaccgaagtaaaaatcata 49686787  T
Q  214 gggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcatnnnn 313  Q
    | || |||| | ||||||| ||||||||||| |||| || | | || |||||||| |||||||| ||||||||||||||||||||| || ||||||        
T  49686786 gcgaggacatgtactatttttgaagaaattatttggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttatgttgtctttcatataa 49686687  T
Q  314 nnnngttccaaaaggagaggaaggagggagtgtaatattaacatggctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaata 413  Q
        |||||||||||||||| ||||||||| || ||||   ||| ||| || ||||| ||||||||||||| |||||||||||||| |||  | |||| |    
T  49686686 aaa-gttccaaaaggagagggaggagggagagtgatat---catagctaaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaaca 49686591  T
Q  414 atggaaatagggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttttgt 513  Q
    |||||||||| ||||      | ||  | ||| | ||| ||| ||||||| ||| ||||||| | |||| | |||||||| |  ||| ||||||||||||    
T  49686590 atggaaatagtgttg------ggccgctcatttttaatgtttgtaacttgaaagtgttttcctcctttggtaaactggacgtgtttcgtagcagttttgt 49686497  T
Q  514 tgagattatcacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatga 613  Q
    ||||||  |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||   ||  || |||||| ||||||||||||||||    
T  49686496 tgagatcgtcacaaccttgaattgccaatgcaccacagtttgggaattcaactgtggtaaaagggtagccaaccaatccaagatttccacaatcaaatga 49686397  T
Q  614 ttctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag 694  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||    
T  49686396 ttctggacaatcatcactgtgtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaag 49686316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 2478439 - 2478378
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  2478439 agaccatttacaatggtaaaacaaattcaacaaccttcaacacccactttttcaattcccaa 2478378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 802 - 854
Target Start/End: Complemental strand, 49678820 - 49678768
Alignment:
Q  802 ccaattgacacgctggttgacttggaaaatgagtaccacacaagtattatgag 854  Q
    |||||||||||| | ||||||||| |||||||||||||||||||| |||||||    
T  49678820 ccaattgacacgttagttgacttgtaaaatgagtaccacacaagtcttatgag 49678768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 877 - 913
Target Start/End: Complemental strand, 48388195 - 48388158
Alignment:
Q  877 attcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  48388195 attcaacaaccttcaacacccactttttcaattcccaa 48388158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 909
Target Start/End: Complemental strand, 51494583 - 51494526
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattc 909  Q
    ||||||| ||||||| ||||| | |||||||||||||| ||||||||||||| |||||    
T  51494583 agaccatttacaatggtaaaatatattcaacaaccttcaacacccacttttttaattc 51494526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 3618564 - 3618503
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  3618564 agaccatttacaatggtaaaacaaattcaacaaccttcaacacccactttttcaattcccaa 3618503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 853 - 908
Target Start/End: Complemental strand, 16175126 - 16175070
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaatt 908  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||    
T  16175126 agaccatgtacaatgctaaaacaaattcaacaaccttcaacacccattttttcaatt 16175070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 6290561 - 6290622
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||||||||||| |||||||||||||||||||||||    
T  6290561 agaccatttacaatggtaaaatacattcaacaaccttcaacacccactttttcaattcccaa 6290622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 848 - 913
Target Start/End: Complemental strand, 34199385 - 34199319
Alignment:
Q  848 ttatgagaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    |||| ||||||| ||||||| ||||| | |||||||||||||| ||| |||||||||||||||||||    
T  34199385 ttataagaccatttacaatggtaaaatacattcaacaaccttcaacatccactttttcaattcccaa 34199319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 3533418 - 3533357
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||| | | ||||||||||||||| ||||||||||||||||||||||    
T  3533418 agaccatttacaatggtaacaaatattcaacaaccttcaacacccactttttcaattcccaa 3533357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 873 - 913
Target Start/End: Original strand, 16020828 - 16020869
Alignment:
Q  873 acaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  16020828 acaaattcaacaaccttcaacacccactttttcaattcccaa 16020869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 28899293 - 28899354
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| | ||||| ||||||||||| ||| ||||||||||||||||||||||    
T  28899293 agaccatttacaatggttaaacacattcaacaaccctcaacacccactttttcaattcccaa 28899354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 909
Target Start/End: Original strand, 52772715 - 52772772
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaacc-ttcacacccactttttcaattc 909  Q
    ||||||||||||||| |||| |||||||||||||| || ||||||| |||||||||||    
T  52772715 agaccatgtacaatggtaaaccaaattcaacaacctttaacacccattttttcaattc 52772772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 853 - 908
Target Start/End: Complemental strand, 48506717 - 48506661
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaatt 908  Q
    ||||||| ||||||| ||||||||||||||||||| || ||| ||||||||||||||    
T  48506717 agaccatttacaatggtaaaacaaattcaacaaccctcaacatccactttttcaatt 48506661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 850 - 913
Target Start/End: Original strand, 56053975 - 56054039
Alignment:
Q  850 atgagaccatgtacaatgataaaacaaattcaacaa-ccttcacacccactttttcaattcccaa 913  Q
    |||||||||| ||||||| | ||||| ||||||||| |||| ||| |||||||||||||||||||    
T  56053975 atgagaccatttacaatggttaaacatattcaacaacccttaacatccactttttcaattcccaa 56054039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 848 - 913
Target Start/End: Original strand, 8991739 - 8991805
Alignment:
Q  848 ttatgagaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    |||| ||||||| ||||||| ||| | | |||||||||||||| ||||||||||||| |||||||||    
T  8991739 ttattagaccatttacaatggtaatatacattcaacaaccttcaacacccactttttgaattcccaa 8991805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 861 - 913
Target Start/End: Complemental strand, 23540529 - 23540476
Alignment:
Q  861 tacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| | ||||| ||||||||||||||| ||||||||||||||||| ||||    
T  23540529 tacaatggttaaacatattcaacaaccttcaacacccactttttcaatttccaa 23540476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 32120549 - 32120488
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  32120549 agaccatttacaatggtaaaacaaattcaacaaccttcaacacccactttttcaattcccaa 32120488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 44084271 - 44084332
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  44084271 agaccatttacaatggtaaaacaaattcaacaaccttcaacacccactttttcaattcccaa 44084332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 4045942 - 4046003
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||    
T  4045942 agaccatgtacaatggtaaatcaaattcaacaaccttcaacatccactttttcaattcccaa 4046003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 7008017 - 7008078
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||| ||||    
T  7008017 agaccatttacaatggtaaaacaaattcaacaaccctcaacacccactttttcaatttccaa 7008078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 29701644 - 29701705
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||||||||||| |||||||||||||||||||||||    
T  29701644 agaccatttacaatggtaaaatacattcaacaaccttcaacacccactttttcaattcccaa 29701705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 42560863 - 42560924
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||||||||||| |   |||||||||||||||||| |||||||||||||||||||||||    
T  42560863 agaccatgtacaatgtttccacaaattcaacaaccttcaacacccactttttcaattcccaa 42560924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 36178816 - 36178754
Alignment:
Q  853 agaccatgtacaatgataaaacaaa-ttcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||||||||||| ||||| ||| ||||||| |||||| ||||||||||||||||||||||    
T  36178816 agaccatgtacaatggtaaaaaaaaattcaacacccttcaacacccactttttcaattcccaa 36178754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 30418540 - 30418479
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||| |||||||| ||||||||||||||||||||||    
T  30418540 agaccatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaa 30418479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 50415941 - 50415880
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||||||||||| |||||||||||||||||| ||||    
T  50415941 agaccatttacaatggtaaaatacattcaacaaccttcaacacccactttttcaatttccaa 50415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 51999348 - 51999287
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| |||||||  |||| | ||||||||||||||| ||||||||||||||||||||||    
T  51999348 agaccatttacaatggcaaaatatattcaacaaccttcaacacccactttttcaattcccaa 51999287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 847 - 909
Target Start/End: Complemental strand, 38572271 - 38572208
Alignment:
Q  847 attatgagaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattc 909  Q
    ||||| ||||||| ||||||| ||||||||||||||||||| || | ||| |||||||||||||    
T  38572271 attattagaccatttacaatggtaaaacaaattcaacaaccctcaatacctactttttcaattc 38572208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 877 - 913
Target Start/End: Complemental strand, 6048783 - 6048746
Alignment:
Q  877 attcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  6048783 attcaacaaccttcaacacccactttttcaattcccaa 6048746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 43473852 - 43473913
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| | ||||| ||||||||||| || ||| |||||||||||||||||||    
T  43473852 agaccatttacaatggttaaacatattcaacaaccctcaacatccactttttcaattcccaa 43473913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 46573036 - 46572975
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| | ||| | |||||||||| |||| ||||||||||||||||||||||    
T  46573036 agaccatctacaatggtgaaaaacattcaacaacattcaacacccactttttcaattcccaa 46572975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 35931822 - 35931883
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| |||||||||||||||||||||| ||| |||||||||||||| ||||    
T  35931822 agaccatttacaatggtaaaacaaattcaacaaccttcaacatccactttttcaatttccaa 35931883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 1958291 - 1958230
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||| |||||||| ||||||||||||||||||||||    
T  1958291 agaccatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaa 1958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 43525200 - 43525139
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||| ||| ||||||||||||||||||| || |||||||||||||||||| ||||    
T  43525200 agaccatttacgatggtaaaacaaattcaacaaccctcaacacccactttttcaatttccaa 43525139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 45101136 - 45101075
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| |||||||  |||| | ||||||||||| ||| ||||||||||||||||||||||    
T  45101136 agaccatttacaatggcaaaatatattcaacaaccctcaacacccactttttcaattcccaa 45101075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 7588616 - 7588555
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||    
T  7588616 agaccatttacaatggtaaaatacattcaacaaccttcaacacccactttttcaattcccaa 7588555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 853 - 908
Target Start/End: Original strand, 44279954 - 44280010
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaacc-ttcacacccactttttcaatt 908  Q
    ||||||||||||||| |||| |||||||||||||| || ||||||||||||||||||    
T  44279954 agaccatgtacaatggtaaatcaaattcaacaacctttaacacccactttttcaatt 44280010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 848 - 908
Target Start/End: Complemental strand, 1073200 - 1073139
Alignment:
Q  848 ttatgagaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaatt 908  Q
    |||| ||||||| ||||||| ||||||||||||||||||| || ||| ||||||||||||||    
T  1073200 ttataagaccatttacaatggtaaaacaaattcaacaaccctcaacatccactttttcaatt 1073139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 877 - 913
Target Start/End: Complemental strand, 22351702 - 22351665
Alignment:
Q  877 attcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  22351702 attcaacaaccttcaacacccactttttcaattcccaa 22351665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 36526783 - 36526844
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaacc-ttcacacccactttttcaattcccaa 913  Q
    ||||||| |||||||  |||| | ||||||||||| || |||||||||||||||||||||||    
T  36526783 agaccatttacaatggcaaaatatattcaacaacccttaacacccactttttcaattcccaa 36526844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 877 - 913
Target Start/End: Original strand, 43021727 - 43021764
Alignment:
Q  877 attcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  43021727 attcaacaaccttcaacacccactttttcaattcccaa 43021764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 853 - 910
Target Start/End: Original strand, 30446204 - 30446262
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcc 910  Q
    ||||||| ||||||| ||||||||||||||||||| || ||||||| ||||||||||||    
T  30446204 agaccatttacaatggtaaaacaaattcaacaaccctcaacacccattttttcaattcc 30446262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 8660519 - 8660580
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||  ||||||  ||||||||||||||| ||||||||||||||||||||||    
T  8660519 agaccatttacaattgtaaaacccattcaacaaccttcaacacccactttttcaattcccaa 8660580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 34838541 - 34838602
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||| |||||||| ||| ||||||||||||||||||    
T  34838541 agaccatttacaatggtaaaatacattcaataaccttcaacactcactttttcaattcccaa 34838602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 36518476 - 36518537
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||| |||||||| ||||||||||||||||||||||    
T  36518476 agaccatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaa 36518537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 854 - 913
Target Start/End: Original strand, 37951709 - 37951769
Alignment:
Q  854 gaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    |||||| ||||||| ||||| | |||||||||||||| ||||| |||||||||||||||||    
T  37951709 gaccatttacaatggtaaaatacattcaacaaccttcaacacctactttttcaattcccaa 37951769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 28318154 - 28318093
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaacc-ttcacacccactttttcaattcccaa 913  Q
    |||||||||| |||| |||| |||||||||||||| || ||| ||||||||| |||||||||    
T  28318154 agaccatgtataatggtaaaccaaattcaacaacctttaacatccacttttttaattcccaa 28318093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 33078896 - 33078835
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| | ||||| ||||||||||| ||| || |||||||||||||||||||    
T  33078896 agaccatttacaatggttaaacatattcaacaaccctcaacatccactttttcaattcccaa 33078835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 909
Target Start/End: Original strand, 19241276 - 19241333
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattc 909  Q
    ||||||| ||||||| ||||| | |||||||||||||| |||||||||||||||||||    
T  19241276 agaccatttacaatggtaaaatacattcaacaaccttcaacacccactttttcaattc 19241333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 27942451 - 27942512
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||||||||||| ||||||||||||||||| |||||    
T  27942451 agaccatttacaatggtaaaatacattcaacaaccttcaacacccactttttcaatccccaa 27942512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Complemental strand, 32976687 - 32976626
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||| |||||||| ||||||||||||||||||||||    
T  32976687 agaccatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaa 32976626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 40888854 - 40888915
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttca-cacccactttttcaattcccaa 913  Q
    ||||||| ||||||| ||||| | |||||| |||||||| ||||||||||||||||||||||    
T  40888854 agaccatttacaatggtaaaatacattcaataaccttcaacacccactttttcaattcccaa 40888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 913
Target Start/End: Original strand, 42317848 - 42317909
Alignment:
Q  853 agaccatgtacaatgataaaacaaattcaacaaccttc-acacccactttttcaattcccaa 913  Q
    ||||||| ||||||| |||||||||||||||||||||| |||  ||||||||||||| ||||    
T  42317848 agaccatttacaatggtaaaacaaattcaacaaccttcaacattcactttttcaatttccaa 42317909  T

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