View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5152_low_1 (Length: 290)
Name: NF5152_low_1
Description: NF5152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5152_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 43607133 - 43606876
Alignment:
| Q |
19 |
gggtggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagtagcaagtactatgag |
118 |
Q |
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| T |
43607133 |
gggtggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaaggtacaagagtagcaagtactatgag |
43607034 |
T |
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| Q |
119 |
ttgtgaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggttnnnnnnnnnnnnnnnnnnnnngtggtaaccgtagtag |
218 |
Q |
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| T |
43607033 |
ttgtgaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggtt---ctgctgctgctgctgctggtggtaaccgtagtag |
43606937 |
T |
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| Q |
219 |
tcatccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttca |
279 |
Q |
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| T |
43606936 |
tcatccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttca |
43606876 |
T |
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