View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5152_low_3 (Length: 237)
Name: NF5152_low_3
Description: NF5152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5152_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 45308504 - 45308388
Alignment:
| Q |
107 |
aagagttgtacaaaaattattatctactgattaaacatacatttgagaatnnnnnnncagaagacatttacagggaactgccacattgatcctcaaataa |
206 |
Q |
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| T |
45308504 |
aagagttgtacaaaaattattatctactgattaaacatacatttgagaataaaaaaacagaagacatttacagggaactgccacattgatcctcaaataa |
45308405 |
T |
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| Q |
207 |
aataataattaattaat |
223 |
Q |
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||||||||||||||||| |
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| T |
45308404 |
aataataattaattaat |
45308388 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45308610 - 45308560
Alignment:
| Q |
1 |
attttaatggacaataaattgtctgttataaatgtttcctttgttagtcag |
51 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45308610 |
attttaatggacaataaattgtctgttataaatgtttcttttgttagtcag |
45308560 |
T |
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