View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5153_high_2 (Length: 333)
Name: NF5153_high_2
Description: NF5153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5153_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 46192709 - 46193018
Alignment:
| Q |
11 |
ttatactacttaacttctttaaatatttgctcaatcaaataagttactcaaaccaaacaaaatcgttactttaaaacgtagtcatttttctctcttaaaa |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46192709 |
ttatactacttaacttctctaaatatttgcttaattaagtaagttactcaaaccaaacaaaatcgttactctaaaacgtagtcatttttctctcttaaaa |
46192808 |
T |
|
| Q |
111 |
tgtgtgaaactctnnnnnnnnnnnnn---ctattgatgagattcaaataatttaaccacttgtcgtgaagttgtcaaggctccaacgaaaagttatcaaa |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46192809 |
tgtgtgaaactctaaaaaaaaaaaaaaaactattgatgagattcaaataatttaaccacttgttgtgaagttgtcaaggctccaacgaaaagttatcaaa |
46192908 |
T |
|
| Q |
208 |
cgcctcaacagtgatcatgtgaatcacattccaaccataaactaaaagaaagcatagcaacataagttctacatgaagagtagtagaagttcctaaattg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46192909 |
cgcctcaacagtgatcatgtgaatcacattccaaccataaactaaaagaaagcatagcaacataagttcaacatgaagagtagtagaagttcctaaattg |
46193008 |
T |
|
| Q |
308 |
tggtcaaaac |
317 |
Q |
| |
|
|||||||||| |
|
|
| T |
46193009 |
tggtcaaaac |
46193018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University