View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5153_low_1 (Length: 356)
Name: NF5153_low_1
Description: NF5153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5153_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 10371965 - 10371628
Alignment:
| Q |
8 |
gagcagagaatagaaactgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaaaaatatttttgattgggatta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10371965 |
gagcagagaatagaaactgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaaaaatatttttgattgggatta |
10371866 |
T |
|
| Q |
108 |
atacaaaacctgctacaaaatctagaaagtcaggaccaaaacttctttttacaatcaattccttca-----gtacaatcaaaacttcttttgacagcagg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10371865 |
atacaaaacctgctacaaaatctagaaagtcaggaccaaaacttctttttacaatcaattccttcaactatgtacaatcaaaacttcttttgacagcagg |
10371766 |
T |
|
| Q |
203 |
aaatgtaatttcaaccgtcacccccacagcaaaaatggaattaagtttttggagtgtatataaatcttctcaatttctcatgctgtgtcataaacttcag |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10371765 |
aaatgtaatttcaaccgtcacccccacagcaaaaatggaattaagtttttggagtgtatataaatcttctcaatttctcatgctgtgtcataaacttcag |
10371666 |
T |
|
| Q |
303 |
tgacggtattatatgttacaattgtcggagcgaaaaac |
340 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10371665 |
tgacgatattatatgttacaattgtcggagcgaaaaac |
10371628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 10093841 - 10093919
Alignment:
| Q |
8 |
gagcagagaatagaaactgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaa |
86 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
10093841 |
gagcagaaaatagaaactggtctaacatgcatatttattttcacacaattgaactttaatatgttttaagctatagaaa |
10093919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 10200723 - 10200801
Alignment:
| Q |
8 |
gagcagagaatagaaactgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaa |
86 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
10200723 |
gagcagaaaatagaaactggtctaacatgcatatttattttcacacaattgaactttaatatgttttaagctatagaaa |
10200801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 10489250 - 10489324
Alignment:
| Q |
266 |
atcttctcaatttctcatgctgtgtcataaacttcagtgacggtattatatgttacaattgtcggagcgaaaaac |
340 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10489250 |
atcttctcaatttctccggctttgccataaacttcaatgacggtattatatgttacaattgttggagcgaaaaac |
10489324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 10100633 - 10100675
Alignment:
| Q |
85 |
aaaaatatttttgattgggattaatacaaaacctgctacaaaa |
127 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
10100633 |
aaaaatatttttgattgggaaaaatacaaaacctgatacaaaa |
10100675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 10208542 - 10208584
Alignment:
| Q |
85 |
aaaaatatttttgattgggattaatacaaaacctgctacaaaa |
127 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
10208542 |
aaaaatatttttgattgggaaaaatacaaaacctgatacaaaa |
10208584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University