View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5155-Insertion-1 (Length: 1152)
Name: NF5155-Insertion-1
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5155-Insertion-1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 930; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 930; E-Value: 0
Query Start/End: Original strand, 8 - 1146
Target Start/End: Original strand, 3013605 - 3014746
Alignment:
| Q |
8 |
ataacttgtcaaataagtcactctctggggtgagagatttgtaaatctattacagtcctatccgtcccagcccggttcacacaagaagaaataaataagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3013605 |
ataacttgtcaaataagtcactctcttgggtgagagatttgtaaatctattacagtcctatccgtcccagcccggttcacacaagaagaaataaataagt |
3013704 |
T |
|
| Q |
108 |
taaacaatgggttttccttaaaaaagagttaaacggtggtttgaaaaccctaatctgaaaaatcgtgaagcatcaaagaagatgaataaaggtaatggta |
207 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
3013705 |
taaacagtcggttttccttaaaaaagagttaaacggtggtttgaaaaccctaatctgaaaaatagtgaagcatcaaagaagatgaataaaggtaatggta |
3013804 |
T |
|
| Q |
208 |
actaaaatcgattgattattattattatgcttgaattttgtgtaattattcaagacaacatgtttgaattttgcttgatgctgctttaatatcaataata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
3013805 |
actaaaatcgattgattattattattatgcttgaattttgtgtaattattcaagacaacatgttcgaattttgcttgatgctgctttaatatcaataata |
3013904 |
T |
|
| Q |
308 |
aacttcgaggtttttgttttgctttgattttccaggtgatactgttaagccaccgagtaatcggaaacctgtttcttgcatcataggtgatgcgtacact |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3013905 |
aacttcgaggtttttgttttgctttgattttccaggtgatactgttaagccaccgagtaatcggaaacctgtttcttgcatcataggtgatgcgtacact |
3014004 |
T |
|
| Q |
408 |
ggcaaaaccacgcttctcggttgtattcgaggtaacaacagttctccccatttttcagcacattttcctgctgttgatgctgaaagacgtatgctggttc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
3014005 |
ggcaaaaccacgcttctcggttgtattcgaggtaacaacagttctccccatttttcagcacattttcctgctggtgatgctgaaagacgtatgctggttc |
3014104 |
T |
|
| Q |
508 |
ttgataacacaccattcaggggcttatatctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatggactt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
3014105 |
ttgataacacaccattcaggggcttatatctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacacccacatactatagactt |
3014204 |
T |
|
| Q |
608 |
acttgatctattaaaaatcaccaacaaacaattcatccttgccttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccatttcgt |
707 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3014205 |
actcgatctattaaaactcaccaacaaacaattcatccttgccttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccttttcgt |
3014304 |
T |
|
| Q |
708 |
aaagcattgttgcagcagtctaaggatgttcaagatgagtttcataccaggctctctaaggttgtttctcagttcaagacacacggactaaatactgact |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3014305 |
aaagcattgttgcagcagtctaaggatgttcaagatgagtttcataccaggctctctaagtttgtttctcagttcaagacacacggactaaatactgact |
3014404 |
T |
|
| Q |
808 |
tgtattataaaaacgaaacaatcgggaggacaaacattcagcattgtgcccacaagtgctacaaggtatgttgatttgtatgtattatagcgatgttgtt |
907 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||| |
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|
| T |
3014405 |
tgtattataaaaacgaaacaatc-ggaggacaaacattcagcattgtgcccacaagtgctataaggtatgttgatttgtatgttttacagcgttgttgtc |
3014503 |
T |
|
| Q |
908 |
gcgtaatatctgcttaattctttctattcatgtttttgtatttcata-ttcagtggtgaaggaatcccggacatgttattttctattg-ttaagtggact |
1005 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
3014504 |
gcgtaatatctgcttaattctttctattcatgtttttgtatttcatatttcagcggtgaaggaatcccggacatgtta-tttctattgtttaagtggact |
3014602 |
T |
|
| Q |
1006 |
c-aaaaaccatggattcccaaatttacctac-atcatgaatatgttgcag--cagccctttttcaactagtatttatttatagttcaatgtttctttgtc |
1101 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||| ||| ||||||||||||||||||| ||| |
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|
| T |
3014603 |
caaaaaaccat-gattcccaaatttacctacaatcatgaatatg-tgcaggttagccttttttcaactagttatta-ttatagttcaatgtttcttcgtc |
3014699 |
T |
|
| Q |
1102 |
acggatctcaataac--atcttgttaatgcaga-tcttcgacttagtc |
1146 |
Q |
| |
|
| |||||| ||||| ||||||||| |||||| |||||||| ||||| |
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|
| T |
3014700 |
gcagatctc-ataacatatcttgttattgcagagtcttcgacctagtc |
3014746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 182276 - 182337
Alignment:
| Q |
384 |
tgcatcataggtgatgcgtacactggcaaaaccacgcttctcggttgtattcgaggtaacaa |
445 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
182276 |
tgcatcataggtgatgtcaacactggaaaaaccaagcttctgggtggtattcgaggtaacaa |
182337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 677 - 725
Target Start/End: Complemental strand, 29220057 - 29220009
Alignment:
| Q |
677 |
ctggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcag |
725 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| || |||||||| |
|
|
| T |
29220057 |
ctggaaaacatgtcctaatgctccaatttgtaaagcagtgatgcagcag |
29220009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 934 - 996
Target Start/End: Original strand, 183042 - 183104
Alignment:
| Q |
934 |
ttcatgtttttgtatttcatatt-cagtggtgaaggaatcccggacatgttattttctattgtt |
996 |
Q |
| |
|
|||||||||| |||||| ||||| || ||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
183042 |
ttcatgttttagtatttgatatttcaatggtgaaggaatcccagacatgtta-tttctattgtt |
183104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 955 - 996
Target Start/End: Complemental strand, 591314 - 591274
Alignment:
| Q |
955 |
ttcagtggtgaaggaatcccggacatgttattttctattgtt |
996 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
591314 |
ttcagtggtgaaggaatcacggacatgtta-tttctattgtt |
591274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 336 - 866
Target Start/End: Complemental strand, 40672775 - 40672231
Alignment:
| Q |
336 |
tttccaggtgatactgttaagccaccg------agtaatcggaaacctgtttcttgcatcataggtgatgcgtacactggcaaaaccacgcttctcggtt |
429 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
40672775 |
tttccaggtgatactgttaagccgccgccgcctagttatcggaaacctgtttcctgcatcataggtgatgcatacactggcaaaaccatgcttctcggtt |
40672676 |
T |
|
| Q |
430 |
gtattcgaggtaacaacagttctccccatttttcagca---------cattttcctgctgttgatgctgaaagacgtatgctggttcttgataacacacc |
520 |
Q |
| |
|
||||||||||||| ||| | ||||||| || || || ||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
40672675 |
gtattcgaggtaaagacaatcttccccatattccatcatcaacaacacattttcctgctggtgatgctgaaagacgtatgctggttgttgataacgcacc |
40672576 |
T |
|
| Q |
521 |
attcaggggcttatatctatgtgatattgctattttggttgttgacattatgcatgat------gatggcttacagccacatactatggacttacttgat |
614 |
Q |
| |
|
| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||| || |
|
|
| T |
40672575 |
aattaggggttcatatctatgtgatattgctattttggttgttgacattatgcatgatcatgatgatggcttacaccca---------gactcactcaat |
40672485 |
T |
|
| Q |
615 |
ctattaaaaatcaccaacaaacaattcatccttgccttgaataagatcgacatgattcatgactggaaaacatgtcctaatgctccatttcgtaaagcat |
714 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40672484 |
ctattaaaaactaccaacaaacaattcattgttgccttgaatatggtcgacatgattcatcactggaaaacatgtcccaatgctccatttcgtaaagcat |
40672385 |
T |
|
| Q |
715 |
tgttgcagcagtctaaggatgttcaagatgagtttcataccaggctctctaaggttgtttctcagttcaagacacacggactaaatactgacttgtatta |
814 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
40672384 |
tgatgcagcagtctaagggtgttcaagatgactttcataccagggtctctaaggttgtttctcagttcaagacacacgggctaaatactgatttgtatta |
40672285 |
T |
|
| Q |
815 |
taaaaacgaaacaatcg--ggaggacaaacattcagcattgtgcccacaagtgc |
866 |
Q |
| |
|
||||||| ||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40672284 |
taaaaacataactattggaggaggacaaacattcagcattgtgcccacaagtgc |
40672231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 40672857 - 40672796
Alignment:
| Q |
183 |
aagaagatgaataaaggtaatggtaactaaaatcgattgattattattattatgcttgaattttg |
247 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40672857 |
aagaagatgaatgaaggtaatgataactaaaatcgattgattatta---ttatgcttgaattttg |
40672796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 946 - 996
Target Start/End: Complemental strand, 40672172 - 40672122
Alignment:
| Q |
946 |
tatttcatatt-cagtggtgaaggaatcccggacatgttattttctattgtt |
996 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
40672172 |
tatttcatatttcagtggtgaaggaatcccggatatgtta-tttctattgtt |
40672122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 677 - 748
Target Start/End: Original strand, 44627000 - 44627071
Alignment:
| Q |
677 |
ctggaaaacatgtcctaatgctccatttcgtaaagcattgttgcagcagtctaaggatgttcaagatgagtt |
748 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
44627000 |
ctggaaaacatgtcgcaatgctccaattcgtaaagcaatgacgcagcagtctaaggatgttcaaaatgagtt |
44627071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 536 - 576
Target Start/End: Original strand, 44605015 - 44605055
Alignment:
| Q |
536 |
tctatgtgatattgctattttggttgttgacattatgcatg |
576 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44605015 |
tctatgtgatattgcaattttggttgttgacattatgcatg |
44605055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 932 - 1010
Target Start/End: Original strand, 44606401 - 44606480
Alignment:
| Q |
932 |
tattcatgtttttgtatttcatatt-cagtggtgaaggaatcccggacatgttattttctatt-gttaagtggactcaaaa |
1010 |
Q |
| |
|
|||| ||||||| |||||| ||||| ||||||||||||||||||||| |||||| || ||||| ||||||||||| ||||| |
|
|
| T |
44606401 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgtta-ttactattagttaagtggacccaaaa |
44606480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 536 - 576
Target Start/End: Original strand, 44626780 - 44626820
Alignment:
| Q |
536 |
tctatgtgatattgctattttggttgttgacattatgcatg |
576 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
44626780 |
tctatgtgatattgcaattttggttgtggacattatgcatg |
44626820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 932 - 986
Target Start/End: Original strand, 44627892 - 44627947
Alignment:
| Q |
932 |
tattcatgtttttgtatttcatatt-cagtggtgaaggaatcccggacatgttatt |
986 |
Q |
| |
|
|||| ||||||| |||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
44627892 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttatt |
44627947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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