View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5155-Insertion-2 (Length: 1099)
Name: NF5155-Insertion-2
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5155-Insertion-2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 186 - 493
Target Start/End: Complemental strand, 45342796 - 45342488
Alignment:
| Q |
186 |
ggtaatttacaagctctgtgtattgtctggtgtgaccattgtctgggatataaacggaaaaacaacaaccaaatagtataccatgccattgtttacctca |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45342796 |
ggtaatttacaagctctgtgtattgtctggtgtgaccattgtctgggatataaacggaaaaacaacaaccaaatagtataccatgccattgtt-acctca |
45342698 |
T |
|
| Q |
286 |
ttaatgcattttcaactttatttcacgttccagtttttt--gtcacattctctgccatttttgttccttcaacttcttctttttacctattcgccgctcc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45342697 |
ttaatgcattttcaactttatttcacgttccagttttttttgtcacattctctgccatttttgttccttcaacttcttctttttacctattcgccgctcc |
45342598 |
T |
|
| Q |
384 |
tattttctctttcttgttcccttcatttcaataatagaactgcatagagaaatcaatatttgatagagatttgtcactaaaacaagtttgacaatcaacg |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45342597 |
tattttctctttcttgttcccttcatttcaataatagaactgcatagagaaatcaatatttgatagagatttgtcactaaaacaagtttgacaatcaact |
45342498 |
T |
|
| Q |
484 |
cttcatttct |
493 |
Q |
| |
|
|||||||||| |
|
|
| T |
45342497 |
cttcatttct |
45342488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 858 - 1072
Target Start/End: Complemental strand, 45342084 - 45341863
Alignment:
| Q |
858 |
atgattgaatcgttgtttcagtgtagtggtgttgttatgctattttttcggt-atgtgcgtatgtatgtttgttga-tcgtatattgaacatttgtttgt |
955 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45342084 |
atgattgaatcgttgtttcagtgtagtggtgttgttatgctattttttcggttatgtgcgtatgtatgtttgttgaatcgtatattgaacatttgtttgt |
45341985 |
T |
|
| Q |
956 |
ttttgtcgttatgcgtaccgttactacaggattgggatttggtggtggt-gtggggctcgtact-gaacgttgatgtctttgtcg--attgtt-gggttt |
1050 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
45341984 |
ttttgtcgttatgcgtaccgttattacaggattgggatttggtggtggtggtggggctcgtactggaacgttgatgtctttgtcgtatttgttggggttt |
45341885 |
T |
|
| Q |
1051 |
gaggaagaaggtaacaacaaca |
1072 |
Q |
| |
|
||||||||||||| | |||||| |
|
|
| T |
45341884 |
gaggaagaaggtatcgacaaca |
45341863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 45342984 - 45342920
Alignment:
| Q |
8 |
attctgacaatgcatacgtatagcaaaggtgggtggtagggaaatcagaagcgtcgtctcagggt |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45342984 |
attctgacaatgcatacgtatagcaaaggtgggtggtagggaaatcagaagcgtcgtctcagggt |
45342920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 566 - 641
Target Start/End: Complemental strand, 45342415 - 45342337
Alignment:
| Q |
566 |
acaaaatcgacggttattctttgttttcattttcac---tatcacatgatgtgatatgtgatatatatattatgacaca |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45342415 |
acaaaatcgacggttattctttgttttcattttcactaatatcacatgatgtgatgtgtgatatatatattatgacaca |
45342337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 819 - 863
Target Start/End: Complemental strand, 45342160 - 45342116
Alignment:
| Q |
819 |
caaaaatcactgttaatttgtagattcattgctattgctatgatt |
863 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45342160 |
caaaaatcactgttaatttgtagattcattgctattgctatgatt |
45342116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 706 - 765
Target Start/End: Complemental strand, 45342272 - 45342214
Alignment:
| Q |
706 |
tactctaagaaaccttcacatggaaccgcaacgtgttatcgtccttttcaccgtcatcac |
765 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
45342272 |
tactctaagaa-ccttcacatggaaccgcaacgtgttgtcgtcattgtcaccgtcatcac |
45342214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University