View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5155-Insertion-3 (Length: 1041)
Name: NF5155-Insertion-3
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5155-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 43 - 576
Target Start/End: Original strand, 29841020 - 29841558
Alignment:
| Q |
43 |
tcattgagaattatcatgacagtggtttcttata-----ctatactataatgccggtcttgtgctgtattatggtccatctaacttgcagtcatgatgca |
137 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841020 |
tcattgagaattatcatgacagtggtttcttatactatactatactataatgccggtcttgtgctgtattatggtccatctaacttgcagtcatgatgca |
29841119 |
T |
|
| Q |
138 |
gaaatccaccactttgggggaccatgaaatatctctctgaaaaaattcctaaggatacttcaagcaaggtgcgaataaaccgcgatctatacactcacga |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29841120 |
gaaatccaccactttgggggaccatgaaatatctctctgaaaaaattcctaaggatacttcaagcaaggtgcgaataaaccgtgatctatacactcacga |
29841219 |
T |
|
| Q |
238 |
aaggtaaattttcccgatttcatgactaaccttgttacctaactgcaatttaataatcattcttgtggtaaatgaaaaagaagaggactaatgaaaacaa |
337 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841220 |
aaggtaaattttcccgatttcatgactaaccttgtttcctaactgcaatttaataatcattcttgtggtaaatgaaaaagaagaggactaatgaaaacaa |
29841319 |
T |
|
| Q |
338 |
tattttatattttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggact |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841320 |
tattttatattttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggact |
29841419 |
T |
|
| Q |
438 |
cttcttggagaacagaaaacataaaagtgacacaaactcattctaaccatctcaatggtgacaaatgatcaaatactatgaatttgcaaatcttatgaaa |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841420 |
cttcttggagaacagaaaacataaaagtgacacaaactcattctaaccatctcaatggtgacaaatgatcaaatactatgaatttgcaaatcttatgaaa |
29841519 |
T |
|
| Q |
538 |
atgttgactttcttgaaaggtgtaagtcaaagaatggtg |
576 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
29841520 |
atgttgactttcttgaaaggtgtaagtcaaagaagggtg |
29841558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 85 - 576
Target Start/End: Complemental strand, 29830471 - 29829977
Alignment:
| Q |
85 |
taatgccggtcttgtgctgtattatggtccatctaacttgcagtcatgatgcagaaatccaccactttgggggaccatgaaatatctctctgaaaaaa-t |
183 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
29830471 |
taatgccggtctcgtgctgtattatggcccatctaacttgcagtcatgatgcagaaatccaccactttgggggaccatgaaatatctttctgaaaaaaat |
29830372 |
T |
|
| Q |
184 |
tcctaaggatacttcaagcaaggtgcgaataaaccgcgatctatacactcacgaaaggtaaattttcccgatttcatgactaaccttgttacctaactgc |
283 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| || ||| |||| ||| |
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| T |
29830371 |
tcccaaggatacttcaagcaaggtgcgaataaaccgcgatctgtacacccacgaaaggtaaattttccagagttcatgactaatctggtttcctatttgc |
29830272 |
T |
|
| Q |
284 |
aatttaataatcattcttgtggtaaatgaaaaagaagaggactaatgaaaacaatattt-tatattttataacaggatcatggagacagctccaacattg |
382 |
Q |
| |
|
||| | || ||||||||||| ||| ||||||||||| |||||||| | || ||||| | | ||||||| ||||||||||||||||||||||||| ||| |
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| T |
29830271 |
aatctgatgatcattcttgtagtacatgaaaaagaaaaggactaacgtaagcaatactgctgtattttacgacaggatcatggagacagctccaactttg |
29830172 |
T |
|
| Q |
383 |
cctgaattttccttggcattgaaaccagatgaataccaacttccactagtgg-actcttcttggagaacagaaaacataaaagtgacacaaactcattct |
481 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| || ||||||||| ||||||||||||||||| |
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| T |
29830171 |
cctgaattttccttggcattgaaaccagatgaatatcaacttccaccagtgggactcttcttggagaactgagaacataaaattgacacaaactcattct |
29830072 |
T |
|
| Q |
482 |
aaccatctcaatggtgacaaatgatcaaatactatgaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgtaagtcaaagaatggtg |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
29830071 |
aaccatctcaatggtgacaaatgatcaaatactaggaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgcaagtcaaagaagggtg |
29829977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 639 - 928
Target Start/End: Original strand, 29841621 - 29841911
Alignment:
| Q |
639 |
gatcacataattcaaagataccttgaaagtagagcttccattggctttaataaaaatttgacactcagggaaaaagaaaggggatccttcccaatatata |
738 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29841621 |
gatcacataattcaaagataccttgaaagtagagcttccattggctttaatgaaaatttgacactcaaggaaaaagaaaggggatccttcccaatatata |
29841720 |
T |
|
| Q |
739 |
ccaataaa-taaagacagttacatcattgatttagtatacagaatttttgcaagtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtata |
837 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29841721 |
ccaataaaataaagacagttacatcattcatttagtatacagaatttttgcaagtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtata |
29841820 |
T |
|
| Q |
838 |
atacaagcgcaaagtgtgtaaagaaaaacctatgtattttcactaagaggtggttttgtgattgaatggaatattcggaatgttgatcatc |
928 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29841821 |
atacaagcacaaagtgtgtaaagaaaaacctatgtattttcacgaagaggtggttttgtgattgaatgaaatattcggaatgttgatcatc |
29841911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 642 - 928
Target Start/End: Complemental strand, 29829861 - 29829573
Alignment:
| Q |
642 |
cacataattcaaagataccttgaaagtagagcttccattggctttaataaaaatttgacactcagggaaaaagaaaggggatccttcccaatatatacca |
741 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
29829861 |
cacataattcaaagataccttgaaagtagaacttccattggctttaatgaaaatttgacactcaaggaaaaggaaaggggatccttctcaatatatacca |
29829762 |
T |
|
| Q |
742 |
ataaataaagacagttacatcattgatttagtatacagaatttttgcaagtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtataatac |
841 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||||||||||| |
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|
| T |
29829761 |
ataaataaagtcagttacatcattcatttaatatacagaatttttgcaagtggttgtgtgtaaaattgacctgtgcattggggtgaaacaagtataatac |
29829662 |
T |
|
| Q |
842 |
aagcgcaaagtgtgt--aaagaaaaacctatgtattttcactaagaggtggttttgtgattgaatggaatattcggaatgttgatcatc |
928 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
29829661 |
aagcacaaagtgtgtggaaaaaaaaacctatgtattttcaccaagagttggttttgtggttgaatggaatattcagaatgttgatcatc |
29829573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 926 - 1016
Target Start/End: Original strand, 29841964 - 29842057
Alignment:
| Q |
926 |
atcctccaagctacttttgtgatggagtacatggattccgctttttatatg-attgatttcatatacctaa-ctctgcat-gagccattcattt |
1016 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
29841964 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatacgaattgatttcatatacctaacctctgcatggagccattcattt |
29842057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 926 - 987
Target Start/End: Complemental strand, 29829509 - 29829447
Alignment:
| Q |
926 |
atcctccaagctacttttgtgatggagtacatggattccgctttttatatg-attgatttcat |
987 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||| |
|
|
| T |
29829509 |
atcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgatttcat |
29829447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 6e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 34624012 - 34623877
Alignment:
| Q |
111 |
gtccatctaacttgcagtcatgatgcagaaatccaccactttgggggaccatgaaatatctctctgaaaaaattcctaaggatacttcaagcaaggtgcg |
210 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
34624012 |
gtccacctaacatgcagtcatgatgcagaaatccaccgctttgggggaccatgaaatatctctctgagaaaattcccaaggatacttcaagcaaggtgcg |
34623913 |
T |
|
| Q |
211 |
aataaaccgcgatctatacactcacgaaaggtaaat |
246 |
Q |
| |
|
||||||||| |||||||| ||| |||| |||||||| |
|
|
| T |
34623912 |
aataaaccgtgatctatatacttacgagaggtaaat |
34623877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 348 - 456
Target Start/End: Complemental strand, 34623750 - 34623642
Alignment:
| Q |
348 |
tttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggactcttcttggag |
447 |
Q |
| |
|
||||| |||| |||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||| || |||||||||| |||| |||||||||| |
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| T |
34623750 |
tttattacagaatcatggaaacagcaccaacattgcctgattttgccttggccttgaaaccagatgattatcaacttccacaagtgagtccttcttggag |
34623651 |
T |
|
| Q |
448 |
aacagaaaa |
456 |
Q |
| |
|
||||||||| |
|
|
| T |
34623650 |
aacagaaaa |
34623642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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