View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5155-Insertion-5 (Length: 753)
Name: NF5155-Insertion-5
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5155-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 8 - 705
Target Start/End: Complemental strand, 30854013 - 30853322
Alignment:
| Q |
8 |
tattggtgtagctggtaaatcatgatgttagttcttccttggtagagaaagtaaagttggagactcaagatttcttcaaccttccaatgtcagagaagaa |
107 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30854013 |
tattggagtagctggtaaatcatgatgttagttcttccttggtggagaaagtaaagttggagactcaagatttcttcaaccttccaatgtcagagaagaa |
30853914 |
T |
|
| Q |
108 |
aaagttttggcaaactcctcaacatatggagggatttgggcaagcatttgttgtgagtgatgaacaaaagcttgattgggcagatattttctttatgact |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30853913 |
aaagttttggcaaactcctcaacatatggagggatttgggcaagcatttgttgtgagtgatgaacaaaagcttgattgggcagatattttctttatgact |
30853814 |
T |
|
| Q |
208 |
acccttcctaaacactctagaatgcctcacttgtttccacaacttcctcttcctatcaggttctctctctatttatcttagatttgagttgaactttact |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30853813 |
acccttcctaaacactctagaatgcctcacttgtttccacaacttcctcttcctatctggttctctctctatttatctttgatttgagttgaactttact |
30853714 |
T |
|
| Q |
308 |
cgatcctgaaaaaatttgtttgtaaagtgaggattgttttccacttataagcttattctctctagagtaataatgaccgaatagcgggtgattcaaccaa |
407 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
30853713 |
cgatcctgaaaaaatttttttgtaaagtgaggattgttttccacttataagcttattttctctggagtaataatgacaaaatagcgggtgattcaaccaa |
30853614 |
T |
|
| Q |
408 |
ttttaaatgagaaatacttacatgatcacaaccttgagtaaaatatcatttgacgcgcacgcacatnnnnnnnnttaaaagatgaaatgattaagtgttg |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||| ||||| |
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| T |
30853613 |
ttttaaatgagaaatacttacatgatcacaaccttgagtaaaatatcattggacgcacacacacataaaaaaaattaaaagatgaaatgattaactgttg |
30853514 |
T |
|
| Q |
508 |
tgtctaaaaagcctctaaaagtagtgatgtgaccaaattgtttatctcttaagataaatttcttagatatcattttaaaatatttttgtttggcccaact |
607 |
Q |
| |
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|| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30853513 |
tgact--aaagcctct--aagtagtgatgtgaccaaattgtttatctcttaagataaatttcttagatatcattttaaaatatttttgtttggcccaact |
30853418 |
T |
|
| Q |
608 |
catatataaaacctaactgtaaggtggaagttgctttcctttataaaatcatttttgggaccatatctcatccggtgtgagagactctttaacaattt |
705 |
Q |
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| T |
30853417 |
catatataaaacctaattgtaaggtggaagttgc-ttcctttataaaatcattttt-ggaccatatctcatccggtgtgagagattctttaacaattt |
30853322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 42 - 705
Target Start/End: Complemental strand, 30829088 - 30828429
Alignment:
| Q |
42 |
ttccttggtagagaaagtaaagttggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactcctcaacatatggaggga |
141 |
Q |
| |
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||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
30829088 |
ttccttgttggagaaagtaaaattggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggcaaactccccatcatatggaggga |
30828989 |
T |
|
| Q |
142 |
tttgggcaagcatttgttgtgagtgatgaacaaaagcttgattgggcagatattttctttatgactacccttcctaaacactctagaatgcctcacttgt |
241 |
Q |
| |
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||||| |||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30828988 |
tttggacaagcatttgttatgagtgaggaacagaaacttgattgggcagatattttctttatgactacccttcctaaacactctagaatgcctcacttgt |
30828889 |
T |
|
| Q |
242 |
ttccacaacttcctcttcctatcaggttctctctctatttatcttagatttgagttgaactttactcgatcctgaaaaaatttgtttgtaaagtgaggat |
341 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30828888 |
ttccacaacttcctcttcctatctggttctctctctatttatctttgatttgagttgaactttactcgatcctgaaaaaatttttttgtaaagtgaggat |
30828789 |
T |
|
| Q |
342 |
tgttttccacttataagcttattctctctagagtaataatgaccgaatagcgggtgattcaaccaattttaaatgagaaatacttacatgatcacaacct |
441 |
Q |
| |
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||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30828788 |
tgttttccacttataagcttattttctctggagtaataatgacaaaatagcgggtgattcaaccaattttaaatgagaaatacttacatgatcacaacct |
30828689 |
T |
|
| Q |
442 |
tgagtaaaatatcatttgacgcgcacgcacatnnnnnnnnttaaaagatgaaatgattaagtgttgtgtctaaaaagcctctaaaagtagtgatgtgacc |
541 |
Q |
| |
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|||||||||||||||| ||||| ||| ||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |
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| T |
30828688 |
tgagtaaaatatcattggacgcacacacacataaaaaaaattaaaagatgaaatgattaactgttgtgact--aaagcctctaaaagtagtgatgtgacc |
30828591 |
T |
|
| Q |
542 |
aaattgtttatctcttaagataaatttcttagatatcattttaaaatatttttgtttggcccaactcatatataaaacctaactgtaaggtggaagttgc |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30828590 |
aaattgtttatctcttaagataaatttcttagatatcatttaaaaatatttttgtttggcccaactcatatataaaacctaattgtaaggtggaagttgc |
30828491 |
T |
|
| Q |
642 |
tttcctttataaaatcatttttgggaccatatctcatccggtgtgagagactctttaacaattt |
705 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30828490 |
-ttcctttataaaatcattttt-ggaccatatctcatccggtgtgagagattctttaacaattt |
30828429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 30841438 - 30841185
Alignment:
| Q |
8 |
tattggtgtagctggtaaatcatgatgttagttcttccttggtagagaaagtaaagttggagactcaagatttcttcaaccttccaatgtcagagaagaa |
107 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||| | |||||||||||| |||| | | ||||| |||||||||||||||||||||||||| |
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| T |
30841438 |
tattgttgcagcttgtaaatcatgatgttagttcttccttgttggagaaagtaaagatggaaattatggattttttcaaccttccaatgtcagagaagaa |
30841339 |
T |
|
| Q |
108 |
aaagttttggcaaactcctcaacatatggagggatttgggcaagcatttgttgtgagtgatgaacaaaagcttgattgggcagatattttctttatgact |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||| ||||||||||||||| ||||||||||||| |
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| T |
30841338 |
aaagttttggcaaactcctcaacatatggagggatttggacaagcatttgttttaagtgaagaacaaaaacttgattgggcagatcttttctttatgaca |
30841239 |
T |
|
| Q |
208 |
acccttcctaaacactctagaatgcctcacttgtttccacaacttcctcttcct |
261 |
Q |
| |
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|||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |
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|
| T |
30841238 |
acccttcctaaacacttgagaatgccacacttatttccacaacttcctcttcct |
30841185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 30836049 - 30835808
Alignment:
| Q |
20 |
tggtaaatcatgatgttagttcttccttggtagagaaagtaaagttggagactcaagatttcttcaaccttccaatgtcagagaagaaaaagttttggca |
119 |
Q |
| |
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|||||||||||| ||||||||| ||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30836049 |
tggtaaatcatggtgttagttcaaatttgattgagaaaataaagttggagatacaagatttcttcaaccttccaatgtcagagaagaaaaagttttggca |
30835950 |
T |
|
| Q |
120 |
aactcctcaacatatggagggatttgggcaagcatttgttgtgagtgatgaacaaaagcttgattgggcagatattttctttatgactacccttcctaaa |
219 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||| ||||||| ||||| || ||||||||||||||||| || | |||||| |||||||||||| |
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|
| T |
30835949 |
aactccccaacatatggagggatttggacaagcatttgttatgagtgaggaacagaaacttgattgggcagatatgttttatatgacaacccttcctaaa |
30835850 |
T |
|
| Q |
220 |
cactctagaatgcctcacttgtttccacaacttcctcttcct |
261 |
Q |
| |
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||||||||||||||||| || |||||||||||||||| |||| |
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|
| T |
30835849 |
cactctagaatgcctcatttatttccacaacttcctcatcct |
30835808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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