View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5155-Insertion-6 (Length: 669)

Name: NF5155-Insertion-6
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5155-Insertion-6
NF5155-Insertion-6
[»] chr6 (15 HSPs)
chr6 (8-454)||(20588354-20588811)
chr6 (455-665)||(1125202-1125413)
chr6 (455-665)||(17816481-17816692)
chr6 (455-665)||(22069943-22070154)
chr6 (455-665)||(18190469-18190698)
chr6 (543-665)||(12655286-12655408)
chr6 (456-529)||(18846442-18846516)
chr6 (456-521)||(18975222-18975288)
chr6 (456-521)||(24391471-24391537)
chr6 (562-663)||(18975026-18975127)
chr6 (557-593)||(24391627-24391663)
chr6 (456-521)||(12658472-12658538)
chr6 (475-529)||(18445026-18445080)
chr6 (556-592)||(18444909-18444945)
chr6 (559-643)||(25951064-25951148)
[»] chr8 (18 HSPs)
chr8 (455-665)||(20042272-20042483)
chr8 (455-665)||(21856803-21857014)
chr8 (457-665)||(19999109-19999318)
chr8 (455-665)||(17617531-17617742)
chr8 (457-645)||(27093193-27093382)
chr8 (557-665)||(15612484-15612592)
chr8 (455-531)||(21234776-21234853)
chr8 (557-665)||(15604133-15604241)
chr8 (456-529)||(19291534-19291608)
chr8 (466-531)||(22724254-22724320)
chr8 (557-649)||(23218854-23218946)
chr8 (474-529)||(22902481-22902536)
chr8 (562-665)||(22724410-22724513)
chr8 (483-531)||(23218741-23218789)
chr8 (556-643)||(19291692-19291779)
chr8 (475-529)||(11350296-11350350)
chr8 (475-529)||(21102394-21102448)
chr8 (455-490)||(23216512-23216548)
[»] chr5 (20 HSPs)
chr5 (455-665)||(20447874-20448085)
chr5 (455-665)||(23603850-23604061)
chr5 (455-665)||(24937515-24937726)
chr5 (455-665)||(23713720-23713931)
chr5 (455-665)||(22944145-22944374)
chr5 (456-529)||(20794414-20794488)
chr5 (465-529)||(21242264-21242329)
chr5 (456-529)||(18069362-18069436)
chr5 (456-529)||(20599509-20599583)
chr5 (456-529)||(20605806-20605880)
chr5 (456-529)||(20612125-20612199)
chr5 (456-529)||(21283908-21283982)
chr5 (456-529)||(24216909-24216983)
chr5 (542-649)||(18069185-18069292)
chr5 (542-649)||(20599653-20599760)
chr5 (542-649)||(20605950-20606057)
chr5 (542-649)||(20612269-20612376)
chr5 (542-649)||(21284052-21284159)
chr5 (542-643)||(24216738-24216839)
chr5 (556-649)||(20794572-20794665)
[»] chr4 (9 HSPs)
chr4 (455-665)||(15351040-15351251)
chr4 (455-665)||(16640808-16641019)
chr4 (455-665)||(11499784-11499994)
chr4 (455-665)||(15449432-15449652)
chr4 (455-665)||(18288893-18289122)
chr4 (455-665)||(14688977-14689206)
chr4 (458-665)||(45242082-45242308)
chr4 (542-650)||(13624113-13624221)
chr4 (474-529)||(10073421-10073476)
[»] chr3 (14 HSPs)
chr3 (455-665)||(9363965-9364176)
chr3 (455-665)||(20558000-20558211)
chr3 (455-665)||(13091778-13091989)
chr3 (455-665)||(6811690-6811901)
chr3 (455-633)||(12779530-12779709)
chr3 (455-665)||(3248281-3248510)
chr3 (455-665)||(13094797-13095025)
chr3 (455-665)||(20152397-20152616)
chr3 (456-529)||(10606205-10606279)
chr3 (456-529)||(22167981-22168055)
chr3 (542-649)||(22168126-22168233)
chr3 (475-529)||(14975150-14975204)
chr3 (542-592)||(14975274-14975324)
chr3 (556-649)||(10606363-10606456)
[»] chr1 (5 HSPs)
chr1 (455-665)||(27043690-27043901)
chr1 (455-665)||(21789804-21790015)
chr1 (557-665)||(16399239-16399347)
chr1 (474-529)||(16399122-16399177)
chr1 (556-592)||(22628442-22628478)
[»] chr7 (24 HSPs)
chr7 (455-665)||(12761-12972)
chr7 (455-665)||(16153000-16153211)
chr7 (455-665)||(9579861-9580072)
chr7 (455-665)||(9727729-9727940)
chr7 (455-665)||(12563801-12564030)
chr7 (559-665)||(4309506-4309612)
chr7 (595-665)||(15295654-15295724)
chr7 (456-649)||(16328955-16329152)
chr7 (542-650)||(8785480-8785588)
chr7 (456-529)||(543206-543280)
chr7 (456-529)||(23512164-23512238)
chr7 (474-529)||(4328018-4328073)
chr7 (474-531)||(8785355-8785412)
chr7 (474-529)||(13632596-13632651)
chr7 (474-529)||(13739276-13739331)
chr7 (456-529)||(14547551-14547625)
chr7 (557-665)||(4328161-4328269)
chr7 (556-649)||(14547374-14547467)
chr7 (556-643)||(14228128-14228215)
chr7 (475-529)||(15923309-15923363)
chr7 (475-529)||(15458629-15458683)
chr7 (482-531)||(23295270-23295319)
chr7 (556-649)||(23511987-23512080)
chr7 (456-499)||(14224873-14224917)
[»] scaffold0035 (3 HSPs)
scaffold0035 (455-665)||(105175-105386)
scaffold0035 (456-529)||(53774-53848)
scaffold0035 (556-649)||(53932-54025)
[»] scaffold0006 (1 HSPs)
scaffold0006 (501-665)||(35670-35843)
[»] scaffold0485 (1 HSPs)
scaffold0485 (456-665)||(12776-13005)
[»] scaffold0301 (1 HSPs)
scaffold0301 (577-665)||(1-89)
[»] scaffold0031 (1 HSPs)
scaffold0031 (455-665)||(21868-22097)
[»] scaffold0012 (4 HSPs)
scaffold0012 (580-665)||(10688-10773)
scaffold0012 (580-665)||(14791-14876)
scaffold0012 (455-529)||(10565-10640)
scaffold0012 (455-529)||(14668-14743)
[»] scaffold0916 (2 HSPs)
scaffold0916 (455-531)||(4257-4334)
scaffold0916 (537-592)||(4178-4233)
[»] chr2 (14 HSPs)
chr2 (542-661)||(29953319-29953438)
chr2 (456-529)||(25353943-25354017)
chr2 (456-529)||(25360222-25360296)
chr2 (557-649)||(24369675-24369767)
chr2 (556-649)||(25353766-25353859)
chr2 (556-649)||(25360044-25360137)
chr2 (456-529)||(15282-15353)
chr2 (474-525)||(24369536-24369587)
chr2 (542-592)||(23138962-23139012)
chr2 (542-592)||(23550752-23550802)
chr2 (556-649)||(15438-15531)
chr2 (474-529)||(24021927-24021982)
chr2 (475-529)||(24823785-24823839)
chr2 (606-642)||(23249487-23249523)
[»] scaffold0029 (1 HSPs)
scaffold0029 (456-529)||(119843-119917)
[»] scaffold0860 (1 HSPs)
scaffold0860 (455-531)||(4958-5035)
[»] scaffold1184 (2 HSPs)
scaffold1184 (557-665)||(1972-2080)
scaffold1184 (456-521)||(1820-1886)
[»] scaffold0074 (1 HSPs)
scaffold0074 (557-663)||(10245-10351)
[»] scaffold0414 (2 HSPs)
scaffold0414 (466-529)||(14798-14862)
scaffold0414 (542-637)||(14633-14728)
[»] scaffold0175 (1 HSPs)
scaffold0175 (474-529)||(10668-10723)
[»] scaffold0014 (1 HSPs)
scaffold0014 (563-649)||(169946-170032)
[»] scaffold0146 (2 HSPs)
scaffold0146 (556-649)||(38638-38731)
scaffold0146 (456-503)||(38838-38886)
[»] scaffold0357 (2 HSPs)
scaffold0357 (474-529)||(1412-1467)
scaffold0357 (542-591)||(1537-1586)
[»] scaffold0037 (1 HSPs)
scaffold0037 (455-529)||(49622-49697)
[»] scaffold0018 (1 HSPs)
scaffold0018 (475-529)||(16141-16195)
[»] scaffold0145 (1 HSPs)
scaffold0145 (636-665)||(1-30)


Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 20588811 - 20588354
Alignment:
Q  8 caattttgttaacaaactttgaaagttagttacaatcctatcagcttataaatacaagtttgaactcaatataatattcaaagatcggaaaatgaaataa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20588811 caattttgttaacaaactttgaaagttagttacaatcctatcagcttataaatacaagtttgaactcaatataatattcaaatatcggaaaatgaaataa 20588712  T
Q  108 tctcaatccctattctcagcctagttcaatttctaacatgatatcatgaaatcccattggattcctcgattttgatcctttatgttgaaaaccgctgtca 207  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20588711 tctcaatcctaattctaagcctagttcaatttctaacatgatatcatgaaatcccattggattcctcgattttgatcctttatgttgcaaaccgctgtca 20588612  T
Q  208 ccgttggtttcgtcttctctgtcacatcgca-----------actattttcgataagattgatgcgcaaaactacatcatctggtgtcatcaagtcgaac 296  Q
    || ||||||||||||||||||||||||||||           || ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||    
T  20588611 ccattggtttcgtcttctctgtcacatcgcaaccatttttctaccattttcgataagatttatgcgcaaagctacatcatctagtgtcatcaagtcgaac 20588512  T
Q  297 cagtaatcaaatattacaaactgcatcactttttcgttgatctttcgattttgtaacgttttatcatgattgacgattgcaatcaaaagggtatcaatca 396  Q
    || |||| |||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||| ||||| ||||||||  ||||||||||    
T  20588511 caataattaaatattacaaactgcatcactttttcgttaatcctttgattctgtaacgttttatcatgattgatgattgtaatcaaaatagtatcaatca 20588412  T
Q  397 agcgtatgaagcttgggagtttcaagattatacactcatttatttgcttcaatcgacg 454  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20588411 agcgtatgaagcttgggagtttcaagattatacacttatttatttgcttcaatcgacg 20588354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 1125413 - 1125202
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||    
T  1125413 gtaaaatttccaagctggatttctgagggactctttcgttgtttgcataaacgggtggtgttgtttgttgtccaaaggtataaaatttttgctcgggact 1125314  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1125313 tttagcaatactacctagttggcattccacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 1125214  T
Q  654 gttaatttatca 665  Q
    | ||||||||||    
T  1125213 gataatttatca 1125202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 17816692 - 17816481
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  17816692 gtaaaatttccaagctggatttctgagagactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtataagaattttgctcgggact 17816593  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17816592 tttagcaacactacctagttagcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggggtgacgacacttaca 17816493  T
Q  654 gttaatttatca 665  Q
    ||| ||||||||    
T  17816492 gttcatttatca 17816481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 22069943 - 22070154
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||| | || ||||||||||||||    
T  22069943 gtaaaatttccaagctggatttctgagagactctttcgttgtttgcacaaatgggtggtgttgtttgttgtccaaaggtataaaagttttgctcgggact 22070042  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  22070043 tttagcaacactacctagttggcattcaacatcagtatggtcaaatattccacaaaattcacaaggtggtgagacaagagcaggtttgacgacacttaca 22070142  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  22070143 gttaatttatca 22070154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 18190469 - 18190698
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacat----------------- 536  Q
    ||||||| | |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||  |                     
T  18190469 gtaaaatctccaagctggatttctgagggactctttggttgttcgcataaacaggtggtgttgtttgttgtccaaaggtatttttaggagttttgtgata 18190568  T
Q  537 -aaattttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagca 635  Q
     ||||||||||||||||| ||| |||||||||||| ||| || ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  18190569 aaaattttgctcgggacttttagcaacactacctaattgccactcaacaccaatatggtcaagtattccacaaaattcacgaggtggtgaaacaagagca 18190668  T
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    |||||||||||||||||| |||| ||||||    
T  18190669 ggtgtgacgacacttacacttaagttatca 18190698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 543 - 665
Target Start/End: Original strand, 12655286 - 12655408
Alignment:
Q  543 tgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtga 642  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12655286 tgctcgggacttttagcaacactacctagttggcattcaacactaatatggccaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtga 12655385  T
Q  643 cgacacttacagttaatttatca 665  Q
    ||||||||||| |||||||||||    
T  12655386 cgacacttacacttaatttatca 12655408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 18846516 - 18846442
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||    
T  18846516 taaaagttccaagctggatttttgagggactctttggttgttttcataactgggtggtgttgtttgttgtccaaa 18846442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 456 - 521
Target Start/End: Complemental strand, 18975288 - 18975222
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgt 521  Q
    ||||| || ||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||||    
T  18975288 taaaagttccaagctggatttttgagggactccttggttgtttgcataacctggtggtgttgtttgt 18975222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 521
Target Start/End: Original strand, 24391471 - 24391537
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgt 521  Q
    ||||| || ||||||||||||| ||||||||| |||||||||||||||| | ||||||| |||||||    
T  24391471 taaaagttccaagctggatttttgagggactccttggttgtttgcataacctggtggtgctgtttgt 24391537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 663
Target Start/End: Complemental strand, 18975127 - 18975026
Alignment:
Q  562 cactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaattt 661  Q
    ||||||||| ||||| |||| | ||| ||||| ||| ||| | ||| | |||||| |||||||||||| |||||||||||||  |||||||| |||| ||    
T  18975127 cactacctaattggctttcaccgccaatatggccaaatataccacagatttcacatggtggtgaaacaggagcaggtgtgacagcacttacacttaactt 18975028  T
Q  662 at 663  Q
    ||    
T  18975027 at 18975026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 593
Target Start/End: Original strand, 24391627 - 24391663
Alignment:
Q  557 aacaacactacctagttggcattcaacaccagtatgg 593  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24391627 aacaacactacctagttggcattcaacgccagtatgg 24391663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 521
Target Start/End: Original strand, 12658472 - 12658538
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgt 521  Q
    ||||| || ||||||||||||| ||||| ||  |||||||||||||||| || ||||||||||||||    
T  12658472 taaaaattccaagctggatttttgaggggcttcttggttgtttgcataaccgagtggtgttgtttgt 12658538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 529
Target Start/End: Complemental strand, 18445080 - 18445026
Alignment:
Q  475 tttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||| |||||| ||| || || | |||||||||||||||||||||||    
T  18445080 tttgagggactccttggttattttcaaaaccaggtggtgttgtttgttgtccaaa 18445026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 592
Target Start/End: Complemental strand, 18444945 - 18444909
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatg 592  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  18444945 taacaacactacctagttgacattcaacactagtatg 18444909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 643
Target Start/End: Complemental strand, 25951148 - 25951064
Alignment:
Q  559 caacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgac 643  Q
    ||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| | |||||||||||    
T  25951148 caacactacctagttggcaatcaatgccaatatggccaaatacaccacaaatttcacaaggaggtgatacaggggcaggtgtgac 25951064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 2e-94; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 20042272 - 20042483
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||    
T  20042272 gtaaaattttcaagctggatttctgagggactctttcgttgtttgcataaacgggtggtgttgtttgttgtccaaaggtataaaatttttgctcgggact 20042371  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20042372 tttagcaacactacctagttggcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 20042471  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  20042472 gttaatttatca 20042483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 21856803 - 21857014
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  21856803 gtaaaatttccaagctggatttctgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtataagaattttgctcgggact 21856902  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21856903 tttagcaacactacctagttggcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 21857002  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  21857003 gttaatttatca 21857014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 457 - 665
Target Start/End: Complemental strand, 19999318 - 19999109
Alignment:
Q  457 aaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggactat 555  Q
    ||||||| |||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| | || |||||||||||||| |    
T  19999318 aaaatttccaagctggatttctgagggactctgtcgttgtttacataaacgggtggtgttgtttgttgtccaaaggtataaaatttttgctcgggacttt 19999219  T
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagt 655  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19999218 tagcaacactacctagttggcattcaacaccaatatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagt 19999119  T
Q  656 taatttatca 665  Q
    ||||||||||    
T  19999118 taatttatca 19999109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 17617742 - 17617531
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| |||||    
T  17617742 gtaaaatttccaagctggatttctgagggactctttggttgtttgcataaacgggtgttgttgtttgttgtccaaaggtataaaaattttgctcaggact 17617643  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||| |||||||||||||||||    
T  17617642 tttagcaacactacctagttggcattcaacaccagtatggtcaagtattccacaaaattcacaaggtgaagaaacaaaagcaagtgtgacgacacttaca 17617543  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  17617542 gttaatttatca 17617531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 457 - 645
Target Start/End: Complemental strand, 27093382 - 27093193
Alignment:
Q  457 aaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggactat 555  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| | || ||||||||| |||| |    
T  27093382 aaaatttccaagctggatttctgagggactctttcgttgtttgcataaacggttggtgttgtttgttgtccaaatgtataaaatttttgctcgtgacttt 27093283  T
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacga 645  Q
    || ||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27093282 tagcaacacttcttagttggcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacga 27093193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 557 - 665
Target Start/End: Complemental strand, 15612592 - 15612484
Alignment:
Q  557 aacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagtt 656  Q
    ||||||| || ||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||| ||||| | |||||||||||  |||| ||||||    
T  15612592 aacaacaatatctagttggcattcaacaccagtatgatcaaatattccacaaacttcacaaggtggtaaaacaggggcaggtgtgacagcactaacagtt 15612493  T
Q  657 aatttatca 665  Q
    || ||||||    
T  15612492 aacttatca 15612484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 455 - 531
Target Start/End: Complemental strand, 21234853 - 21234776
Alignment:
Q  455 gtaaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg 531  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  21234853 gtaaactttccaagctggatttttgagggactctttggttgtttgcataaccgggtggtgttgtttgctgtccaaagg 21234776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 557 - 665
Target Start/End: Complemental strand, 15604241 - 15604133
Alignment:
Q  557 aacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagtt 656  Q
    |||||||||| ||||||| ||||||||||||||||| |||| ||||| ||||| ||||||||||||| ||||| | |||||||||||  |||| | ||||    
T  15604241 aacaacactatctagttgtcattcaacaccagtatgatcaaatattccacaaacttcacaaggtggtaaaacaggggcaggtgtgacagcactaatagtt 15604142  T
Q  657 aatttatca 665  Q
    || ||||||    
T  15604141 aacttatca 15604133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 19291534 - 19291608
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  19291534 taaaaattccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgtttgttgtccaaa 19291608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 22724254 - 22724320
Alignment:
Q  466 aagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg 531  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |||||||    
T  22724254 aagctggatttttgagggaccctctggttgtttgcataaacgggtggtgttgtttgttgaccaaagg 22724320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 649
Target Start/End: Original strand, 23218854 - 23218946
Alignment:
Q  557 aacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||| |||||||||||||||||||||| || |||||| |||  |||| ||||| |||||| |||||||||||| ||||| ||||||| |||||    
T  23218854 aacagcactacctagttggcattcaacgccggtatggccaaacattccacaaacttcacatggtggtgaaacaggagcatgtgtgacaacact 23218946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 22902536 - 22902481
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  22902536 tttttagggactctttggttgtttgcataaccgggtggtgctgtttgttgtccaaa 22902481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 562 - 665
Target Start/End: Original strand, 22724410 - 22724513
Alignment:
Q  562 cactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaattt 661  Q
    |||| ||||||||||| ||||| ||||| ||| ||| ||| | ||| | |||||| |||||||| ||||||| ||||||||| ||||||||| ||| |||    
T  22724410 cactgcctagttggcactcaacgccagtttggccaaatataccacatacttcacatggtggtgacacaagagtaggtgtgacaacacttacacttatttt 22724509  T
Q  662 atca 665  Q
    ||||    
T  22724510 atca 22724513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 531
Target Start/End: Original strand, 23218741 - 23218789
Alignment:
Q  483 actctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg 531  Q
    |||||||||||||||||| || |||||||||||||||| ||||||||||    
T  23218741 actctttggttgtttgcacaaccgggtggtgttgtttgctgtccaaagg 23218789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 19291692 - 19291779
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgac 643  Q
    |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| |||||||||||||    
T  19291692 taacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgac 19291779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 529
Target Start/End: Original strand, 11350296 - 11350350
Alignment:
Q  475 tttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||| |||||| ||| || || | |||||||||||||||||||||||    
T  11350296 tttgagggactccttggttattttcaaaaccaggtggtgttgtttgttgtccaaa 11350350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 529
Target Start/End: Original strand, 21102394 - 21102448
Alignment:
Q  475 tttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||| |||||| ||| || || | |||||||||||||||||||||||    
T  21102394 tttgagggactccttggttattttcaaaatcaggtggtgttgtttgttgtccaaa 21102448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 490
Target Start/End: Original strand, 23216512 - 23216548
Alignment:
Q  455 gtaaaattttcaagctgga-ttttgagggactctttg 490  Q
    ||||||||||||||||||| |||||||||||||||||    
T  23216512 gtaaaattttcaagctggatttttgagggactctttg 23216548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 4e-92; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 20447874 - 20448085
Alignment:
Q  455 gtaaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||    
T  20447874 gtaaaatttccaagctggatttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtatacaacttttgctcgggact 20447973  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20447974 tttaacaacactacctagttggcattcaacaccagtatggccaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgcgacgacacttaca 20448073  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  20448074 gttaatttatca 20448085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 23603850 - 23604061
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||    
T  23603850 gtaaaatttccaagctagatttctgagggactcttttgttgtttgcataaacggatggtgttgtttgttgtccaaaggtataaaaaatttgctcgggact 23603949  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  23603950 tttagcaacactacctagttggcattcaacaccagtatggtcaagtattccataaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 23604049  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  23604050 gttaatttatca 23604061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 24937726 - 24937515
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||| | |||||||||||||| ||    
T  24937726 gtaaaatttccaagctggatttctgagggactctttcgttgtttgtacaaatgggtggtgttgtttgttgtccaaaggtataaaaattttgctcggggct 24937627  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     |||  ||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24937626 tttagtaacactacctagttggcattcaacatcagtatggtcaaatattccacaaaattcacaaggtggtgagacaagagcaggtgtgacgacacttaca 24937527  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  24937526 gttaatttatca 24937515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 23713720 - 23713931
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||| ||  ||||||||||||| ||||| |||||||| | || ||||||||||| ||    
T  23713720 gtaaaatttccaagctggatttctgagggactctttcgttgtttgcacaattgggtggtgttgttcgttgtacaaaggtataaaatttttgctcggggct 23713819  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23713820 tttagcaacactacctagttggcattcaacatcagtatggtcaaatattccacaaaattcacaaggtggtgagacaagagcaggtgtgacgacacttaca 23713919  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  23713920 gttaatttatca 23713931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 22944374 - 22944145
Alignment:
Q  455 gtaaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg------------------taca 535  Q
    ||||||||| ||||||| ||||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||||                  || |    
T  22944374 gtaaaatttccaagctgaatttttgagggactatttggttgttagcataaccgggtggtgttgtttgttgtccaaagggattttgaggagttttgttata 22944275  T
Q  536 taaattttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagca 635  Q
     ||| ||||||||||||| | |||||||||||| |||||||||||||| ||||||    ||||||||| |||||||||||| ||||||||||||  ||||    
T  22944274 aaaaatttgctcgggactttcaacaacactaccaagttggcattcaacgccagtaataccaagtattccacaaaattcacatggtggtgaaacagaagca 22944175  T
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    |||||||||||||||| | |||||| ||||    
T  22944174 ggtgtgacgacacttatacttaattcatca 22944145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 20794414 - 20794488
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  20794414 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgtttgttgtccaaa 20794488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 465 - 529
Target Start/End: Original strand, 21242264 - 21242329
Alignment:
Q  465 caagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  21242264 caagctggatttttgagggactctttggttgtttgcataaatgggtggtgttgcttgttgtccaaa 21242329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 18069436 - 18069362
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  18069436 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgcttgttgtccaaa 18069362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 20599509 - 20599583
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  20599509 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgcttgttgtccaaa 20599583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 20605806 - 20605880
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  20605806 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgcttgttgtccaaa 20605880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 20612125 - 20612199
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  20612125 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgcttgttgtccaaa 20612199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 21283908 - 21283982
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  21283908 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgcttgttgtccaaa 21283982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 24216983 - 24216909
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  24216983 taaaagttccaagctggatttttgagggactctttggttgtttgcataactggatggtgttgtttgttgtccaaa 24216909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 649
Target Start/End: Complemental strand, 18069292 - 18069185
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||| |||||  |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| |||||||||||    
T  18069292 ttgctcaggacttctaacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtg 18069193  T
Q  642 acgacact 649  Q
    || |||||    
T  18069192 acaacact 18069185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 649
Target Start/End: Original strand, 20599653 - 20599760
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||| |||||  |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| |||||||||||    
T  20599653 ttgctcaggacttctaacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtg 20599752  T
Q  642 acgacact 649  Q
    || |||||    
T  20599753 acaacact 20599760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 649
Target Start/End: Original strand, 20605950 - 20606057
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||| |||||  |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| |||||||||||    
T  20605950 ttgctcaggacttctaacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtg 20606049  T
Q  642 acgacact 649  Q
    || |||||    
T  20606050 acaacact 20606057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 649
Target Start/End: Original strand, 20612269 - 20612376
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||| |||||  |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| |||||||||||    
T  20612269 ttgctcaggacttctaacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtg 20612368  T
Q  642 acgacact 649  Q
    || |||||    
T  20612369 acaacact 20612376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 649
Target Start/End: Original strand, 21284052 - 21284159
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||| |||||  |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| |||||||||||    
T  21284052 ttgctcaggacttctaacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtg 21284151  T
Q  642 acgacact 649  Q
    || |||||    
T  21284152 acaacact 21284159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 643
Target Start/End: Complemental strand, 24216839 - 24216738
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||| ||||  ||||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| | |||||||||    
T  24216839 ttgctcaggacctttaacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggggcaggtgtg 24216740  T
Q  642 ac 643  Q
    ||    
T  24216739 ac 24216738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 649
Target Start/End: Original strand, 20794572 - 20794665
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    ||||||||||||| |||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| | ||||||||||| |||||    
T  20794572 taacaacactaccgagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggggcaggtgtgacaacact 20794665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 4e-92; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 15351040 - 15351251
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||    
T  15351040 gtaaaatttccaagctggatttctgagggactctttcgttgtttgcataaacgggtggtgttgtttgttgtccaaaggtataaaatttttgctcgggact 15351139  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15351140 tttagcaacactacctagttggcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 15351239  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  15351240 gttaatttatca 15351251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 16640808 - 16641019
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||  |  ||||||||||||||||    
T  16640808 gtaaaatttccaagctggatttctgagggactctttggttgtttgcataaacagatggtgttgtttcttgtccaaaggtgtaagaattttgctcgggact 16640907  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  16640908 tttagcaacactacctagttggcattcaacaccagtatggtcaagtattccacaaaattctcaaggtggtgaaacaagagcaggtgtgacgacacttata 16641007  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  16641008 gttaatttatca 16641019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 11499784 - 11499994
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||  ||||    
T  11499784 gtaaaatttccaggctggatttctgagggactctttggttgtttgcataaacgggtggtgttgtttgttatccaaaggtataaaaattttgctcaagact 11499883  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||    
T  11499884 tttagcaacactacctagttggcattaaacaccagtatggtcaagtattccacaaaattcacaaggtggtg-aacaagagcaggtgcgacgacacttaca 11499982  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  11499983 gttaatttatca 11499994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 15449432 - 15449652
Alignment:
Q  455 gtaaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg---------tacataaattttg 544  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||         || | ||| ||||    
T  15449432 gtaaaattttcaagttggatttttgagggactctttggttgtttgcataaacggatggtgttgtttgttgtccaaagggatttttgttataaaaaatttg 15449531  T
Q  545 ctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacg 644  Q
     |||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15449532 ttcgggacttttagcaacactaccttgttggcattcaacaccagtatggccaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacg 15449631  T
Q  645 acacttacagttaatttatca 665  Q
    |||||||||||||||||||||    
T  15449632 acacttacagttaatttatca 15449652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 18289122 - 18288893
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg------------------taca 535  Q
    ||||||| | |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||                  || |    
T  18289122 gtaaaatctccaagctggatttctgagcgactcgttggttgtttgcataaacgggtggtgttgtttgttgtccaaagggatttttaggagttttgttata 18289023  T
Q  536 taaattttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagca 635  Q
     ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  18289022 aaaattttgctcgggacttttagcaacactacctagttggcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtaaaacaagagca 18288923  T
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    |||||||||||||||| |||||||||||||    
T  18288922 ggtgtgacgacacttatagttaatttatca 18288893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 14688977 - 14689206
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg------------------taca 535  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||                  || |    
T  14688977 gtaaaatttccaagctggatttctgagggactctttggttgtttgcataaacaggtggtgttgtttgttgtccaaagggatttttaggagttttgttata 14689076  T
Q  536 taaattttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagca 635  Q
     |||  || ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  14689077 aaaaaatttctcgggacttttagcaacactacctagttggcattcaacaccagtatggccaagtattccacaaaattcataaggtggtgaaacaagagca 14689176  T
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    |||||||||||||||||| |||||||||||    
T  14689177 ggtgtgacgacacttacacttaatttatca 14689206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 458 - 665
Target Start/End: Original strand, 45242082 - 45242308
Alignment:
Q  458 aaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg------------------tacataa 538  Q
    |||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||                  || | ||    
T  45242082 aaatttccaagctagatttctgagggactctttggttgtttgcataaacgggtggtattgtttgttgtccaaagggatttttaggagttttgttataaaa 45242181  T
Q  539 attttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggt 638  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||   ||||||||| ||||||||||||||||||||||||||||||||||    
T  45242182 attttgctcgggacttttagcaacactacctagttggcattcaacaacagtataaacaagtattccacaaaattcacaaggtggtgaaacaagagcaggt 45242281  T
Q  639 gtgacgacacttacagttaatttatca 665  Q
    ||||||||||||||| |||||||||||    
T  45242282 gtgacgacacttacacttaatttatca 45242308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 542 - 650
Target Start/End: Complemental strand, 13624221 - 13624113
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||||| ||| | |||| ||||||||||||| |||||||| | ||||||| ||||||||| ||||| || ||| ||||||||||||  ||||||| ||    
T  13624221 ttgctcggaactttcaacagcactacctagttgacattcaacgctagtatggccaagtattccacaaactttacatggtggtgaaacagaagcaggtatg 13624122  T
Q  642 acgacactt 650  Q
    || ||||||    
T  13624121 acaacactt 13624113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 529
Target Start/End: Original strand, 10073421 - 10073476
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||||||  ||||||| ||||||||| ||  ||||||||||||||||||||||||    
T  10073421 ttttgaggacctctttgattgtttgcaaaactgggtggtgttgtttgttgtccaaa 10073476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 4e-92; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 9363965 - 9364176
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  9363965 gtaaaatttccaagctggatttctgagggactctttgcttgtttgcataaacgggtggtgttgtttgttgtccaaaggtataagaattttgctcgggact 9364064  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9364065 tttagcaacactacctagttggcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 9364164  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  9364165 gttaatttatca 9364176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 20558211 - 20558000
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  20558211 gtaaaatttccaagctggatttctgagggactctttggttgtttgcatagacgggtggtgttgtttgttgtccaaaggtataagaattttgctcgggact 20558112  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20558111 attagcaacactacctagtttgcattcaataccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 20558012  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  20558011 gttaatttatca 20558000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 13091778 - 13091989
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||||    
T  13091778 gtaaaatttccaagctggatttctgagggactctttcgttgtttgcataaacgggtggtgttgtttgttgtccaaaggtataaaatttttgctcgtgact 13091877  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13091878 tttagcaacactacctagctggcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 13091977  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  13091978 gttaatttatca 13091989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 6811901 - 6811690
Alignment:
Q  455 gtaaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| | || ||||||||||||||    
T  6811901 gtaaaatttccaagctggatttttgagggactctttcgttgtttgcacaaatgggtggtgttgtttgttgtccaaaggtataaaatttttgctcgggact 6811802  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| |||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  6811801 tttagcaacactacctagttggcattcaacatcagtatggtcaaatattccacaaaattcataaggtggtgagacaagagcaggtgtgacgacacttaca 6811702  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  6811701 gttaatttatca 6811690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 455 - 633
Target Start/End: Original strand, 12779530 - 12779709
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  12779530 gtaaaatttccaagctggatttgtgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtataaaaattttgctcgggact 12779629  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagag 633  Q
     ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  12779630 tttagcaacactacctagttggcattcaacaccaatatggtcaagtattccacaaaattcacaaggtggtgaaacaagag 12779709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 3248281 - 3248510
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg------------------taca 535  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |||                  || |    
T  3248281 gtaaaattttcaagctggatttctaagggactctttggttgtttgcataatcgggtggtgttgtttgttgtccagagggatttttaggagttttgttata 3248380  T
Q  536 taaattttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagca 635  Q
     ||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||| |    
T  3248381 aaaattttgctcgggacttttagcaacactacctagttggcaatcaacatcagtatggccaagtattccacaaaattcacaaggtggtgaaacaggagaa 3248480  T
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    |||||||||| ||||||| |||||||||||    
T  3248481 ggtgtgacgatacttacacttaatttatca 3248510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 13095025 - 13094797
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgct----cgg 549  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| | || |||||||    ||     
T  13095025 gtaaaatttccaagctggatttctgagggactctttcgttgtttgcataaatggatggtgttgtttgttgtccaaaggtataaaatttttgctctcccga 13094926  T
Q  550 g----actatta---------acaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcag 636  Q
    |    | | |||         ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13094925 gcaaaaattttatacctttggacagcactacctagttggcattcaacatcagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcag 13094826  T
Q  637 gtgtgacgacacttacagttaatttatca 665  Q
    |||||||||||||||||||||||||||||    
T  13094825 gtgtgacgacacttacagttaatttatca 13094797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 20152616 - 20152397
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggt------------------aca 535  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  | |    
T  20152616 gtaaaatttccaagctggatttctgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtatttttaggagtttggttata 20152517  T
Q  536 taaattttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagca 635  Q
     ||||||||||||||||| ||| ||||||          ||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  20152516 aaaattttgctcgggacttttagcaacac----------gcattcaacactagtatggccaagtattccacaaaattcataaggtggtgaaacaagagca 20152427  T
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    |||||||||||||||||| || ||||||||    
T  20152426 ggtgtgacgacacttacacttgatttatca 20152397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 10606205 - 10606279
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  10606205 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgtttgttgtccaaa 10606279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 22167981 - 22168055
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  22167981 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgcttgttgtccaaa 22168055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 649
Target Start/End: Original strand, 22168126 - 22168233
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||| |||||  |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| |||||||||||    
T  22168126 ttgctcaggacttctaacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtg 22168225  T
Q  642 acgacact 649  Q
    || |||||    
T  22168226 acaacact 22168233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 529
Target Start/End: Original strand, 14975150 - 14975204
Alignment:
Q  475 tttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||| |||||| ||| || || | |||||||||||||||||||||||    
T  14975150 tttgagggactccttggttattttcaaaatcaggtggtgttgtttgttgtccaaa 14975204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 14975274 - 14975324
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatg 592  Q
    |||||| |||||  ||||||||||||||||||| ||||||||||| |||||    
T  14975274 ttgctcaggacttctaacaacactacctagttgacattcaacaccggtatg 14975324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 649
Target Start/End: Original strand, 10606363 - 10606456
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||||||||||||||||||||| | ||  ||| ||||| ||| ||  | ||||| ||||||||| ||||  ||| ||||||||||||| |||||    
T  10606363 taacaacactacctagttggcaattaatgccaatatggccaaatacaccacaaacttcacaaggaggtgctacaggagcaggtgtgacaacact 10606456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 4e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 27043901 - 27043690
Alignment:
Q  455 gtaaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| ||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | || ||||||||||||||    
T  27043901 gtaaaatttccaagctggatttttgagggactctttcgttgcttgcataaacgggtggtgttgtttgttgtccaaaggtataaaatttttgctcgggact 27043802  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27043801 tttaacaacactacctagttggcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 27043702  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  27043701 gttaatttatca 27043690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 21789804 - 21790015
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||   | | || ||||||||||||||    
T  21789804 gtaaaatttccaagctggatttctgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtacaaaatgataaaatttttgctcgggact 21789903  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21789904 tttagcaacactacctagttggcattcaacaccagtatgatcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 21790003  T
Q  654 gttaatttatca 665  Q
     |||||||||||    
T  21790004 cttaatttatca 21790015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 557 - 665
Target Start/End: Original strand, 16399239 - 16399347
Alignment:
Q  557 aacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagtt 656  Q
    ||||||||||||||||||||||||||| | |||||| |||| ||||| ||| | ||||||||||||||||||| ||||||||||||  ||||||||| ||    
T  16399239 aacaacactacctagttggcattcaacgcgagtatgatcaaatattccacatacttcacaaggtggtgaaacaggagcaggtgtgataacacttacactt 16399338  T
Q  657 aatttatca 665  Q
    |||||||||    
T  16399339 aatttatca 16399347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 474 - 529
Target Start/End: Original strand, 16399122 - 16399177
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  16399122 ttttgagggactctttggttgtttgcataaccaggtggtgttgtttgttgtccaaa 16399177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 592
Target Start/End: Original strand, 22628442 - 22628478
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatg 592  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  22628442 taacaacactacctagttgacattcaacactagtatg 22628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 1e-89; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 12761 - 12972
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  12761 gtaaaatttccaagctggatttctgagggactctttggttgtttgcatagacgggtggtgttgtttgttgtccaaaggtataagaattttgctcgggact 12860  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12861 tttagcaacactacctagtttgcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 12960  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  12961 gttaatttatca 12972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 16153000 - 16153211
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||||||||| || |||||||||||| |||||||||||||| ||||||||||||||| |  ||||||| ||||||||    
T  16153000 gtaaaatttccaagctggatttctgagggactcgttcgttgtttgcatacacgggtggtgttgtgtgttgtccaaaggtataagaattttggtcgggact 16153099  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16153100 tttagcaacacgacctagtttgcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 16153199  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  16153200 gttaatttatca 16153211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 9580072 - 9579861
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||| | || ||||||||||||||    
T  9580072 gtaaaatttccaagctggatttctgagagactctttcgttgtttgcacaaatgggtggtgttgtttgttgtccaaaggtataaaatttttgctcgggact 9579973  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| |||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9579972 tttagcaacactacctagttggcattcaacatcagtatagtcgagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaga 9579873  T
Q  654 gttaatttatca 665  Q
    | ||||||||||    
T  9579872 gataatttatca 9579861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 9727940 - 9727729
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||| | || ||||||||||||||    
T  9727940 gtaaaatttccaagctggatttctgagagactctttcgttgtttgcacaaatgggtggtgttgtttgttgtccaaaggtataaaatttttgctcgggact 9727841  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| |||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9727840 tttagcaacactacctagttggcattcaacatcagtatagtcgagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaga 9727741  T
Q  654 gttaatttatca 665  Q
    | ||||||||||    
T  9727740 gataatttatca 9727729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 12564030 - 12563801
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacat----------------- 536  Q
    ||||||| | |||||||||||| || ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||  |                     
T  12564030 gtaaaatctccaagctggatttctgcgggactctttggttgtttgcataaatgggtagtgttatttgttgtccaaaggtatttttaggagttttgttata 12563931  T
Q  537 -aaattttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagca 635  Q
     ||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12563930 aaaattttgctcggaacttttagcaacactacctagttggcatttaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagca 12563831  T
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    ||||||||||||||||||||||||||||||    
T  12563830 ggtgtgacgacacttacagttaatttatca 12563801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 559 - 665
Target Start/End: Complemental strand, 4309612 - 4309506
Alignment:
Q  559 caacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaa 658  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||    
T  4309612 caacactacctagttggcattcaacaccagtatggccaagtattccacaaaatacacaaggtggtgaaacaggagcaggtgtgatgacacttacaattaa 4309513  T
Q  659 tttatca 665  Q
    |||||||    
T  4309512 tttatca 4309506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 595 - 665
Target Start/End: Original strand, 15295654 - 15295724
Alignment:
Q  595 caagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaatttatca 665  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15295654 caagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaatttatca 15295724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 456 - 649
Target Start/End: Original strand, 16328955 - 16329152
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaatt---ttgctcggga 551  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||   |  |  |||   |||||| |||    
T  16328955 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgtttgttgtccaaaaagattttgatttacttgctcagga 16329054  T
Q  552 ctattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |   |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| ||||||||||||| |||||    
T  16329055 cctctaacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgacaacact 16329152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 542 - 650
Target Start/End: Original strand, 8785480 - 8785588
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||||||||| |  ||| |||||||||||||||||||||| | ||||||  ||||||||| ||||| |||||| |||||||||||| |||||||||||    
T  8785480 ttgctcgggactttcgacagcactacctagttggcattcaacgctagtatgaccaagtattccacaaacttcacatggtggtgaaacaggagcaggtgtg 8785579  T
Q  642 acgacactt 650  Q
    || ||||||    
T  8785580 acaacactt 8785588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 543206 - 543280
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  543206 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgtttgttgtccaaa 543280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 23512238 - 23512164
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  23512238 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgtttgttgtccaaa 23512164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 474 - 529
Target Start/End: Original strand, 4328018 - 4328073
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  4328018 ttttgagggactctttggttgtttgcataatcgggtggtgctgtttgttgtccaaa 4328073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 474 - 531
Target Start/End: Original strand, 8785355 - 8785412
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg 531  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||    
T  8785355 ttttgagggactctttcgttgtttgcacaaccgggtggtgttgtttgttgtccaaagg 8785412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 13632651 - 13632596
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  13632651 ttttgagggactctttggttgtttgcataactaggtggtgttgtttgttgtccaaa 13632596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 529
Target Start/End: Complemental strand, 13739331 - 13739276
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  13739331 ttttgagggactctttggttgtttgcataactaggtggtgttgtttgttgtccaaa 13739276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 14547625 - 14547551
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||| ||||||||  ||||||||||| ||||||||||||    
T  14547625 taaaagttccaagctggatttttgagggactctttggttgcttgcataactgggtggtgttgcttgttgtccaaa 14547551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 557 - 665
Target Start/End: Original strand, 4328161 - 4328269
Alignment:
Q  557 aacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagtt 656  Q
    |||| |||||||||||||||||||||||||||||||  ||| ||||| | ||| ||||||||||||  ||||| | ||  ||||||| ||| | ||||||    
T  4328161 aacagcactacctagttggcattcaacaccagtatgaccaaatattccataaacttcacaaggtggcaaaacaggggcgtgtgtgacaacattaacagtt 4328260  T
Q  657 aatttatca 665  Q
    || ||||||    
T  4328261 aacttatca 4328269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 556 - 649
Target Start/End: Complemental strand, 14547467 - 14547374
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| ||||||||||||| |||||    
T  14547467 taacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgacaacact 14547374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 643
Target Start/End: Original strand, 14228128 - 14228215
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgac 643  Q
    |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| |||||||||||||    
T  14228128 taacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgac 14228215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 529
Target Start/End: Original strand, 15923309 - 15923363
Alignment:
Q  475 tttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||| |||||||||| || || | |||||||||||||||||||||||    
T  15923309 tttgagggactccttggttgttttcaaaaccaggtggtgttgtttgttgtccaaa 15923363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 529
Target Start/End: Complemental strand, 15458683 - 15458629
Alignment:
Q  475 tttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||| |||||| ||| || || | |||||||||||||||||||||||    
T  15458683 tttgagggactccttggttattttcaaaaccaggtggtgttgtttgttgtccaaa 15458629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 23295270 - 23295319
Alignment:
Q  482 gactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg 531  Q
    |||||||||||||||||||| | ||||| ||||||||| ||| |||||||    
T  23295270 gactctttggttgtttgcatgaccgggtagtgttgtttcttgaccaaagg 23295319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 649
Target Start/End: Complemental strand, 23512080 - 23511987
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||||||||||| |||||| || ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| ||||||||||||| |||||    
T  23512080 taacaacactacttagttgacaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgacaacact 23511987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 499
Target Start/End: Original strand, 14224873 - 14224917
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgc 499  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||    
T  14224873 taaaagttccaagctggatttttgagggactctttggttgtttgc 14224917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 156; Significance: 2e-82; HSPs: 3)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 455 - 665
Target Start/End: Original strand, 105175 - 105386
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaaggtacataaattttgctcgggact 553  Q
    ||||||||| |||||||||||| |||||||||| || |||||||||||| |||||||||||||| ||||||||||||||| |  ||||||||||||||||    
T  105175 gtaaaatttccaagctggatttctgagggactcgttcgttgtttgcatacacgggtggtgttgtgtgttgtccaaaggtataagaattttgctcgggact 105274  T
Q  554 attaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 653  Q
     ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  105275 tttagcaacactacctagtttgcattcaacaccagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttaca 105374  T
Q  654 gttaatttatca 665  Q
    ||||||||||||    
T  105375 gttaatttatca 105386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 53774 - 53848
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  53774 taaaaattccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgtttgttgtccaaa 53848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 556 - 649
Target Start/End: Original strand, 53932 - 54025
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| ||||||||||||| |||||    
T  53932 taacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgacaacact 54025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 501 - 665
Target Start/End: Complemental strand, 35843 - 35670
Alignment:
Q  501 taaacgggtggtgttgtttgttgtccaaagg---------tacataaattttgctcgggactattaacaacactacctagttggcattcaacaccagtat 591  Q
    |||||||||||||||||||||||||||||||         || | ||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||    
T  35843 taaacgggtggtgttgtttgttgtccaaagggatttttgttataaaaattttgctcaggacttttagcaacactacctagttggcattcaacatcagtat 35744  T
Q  592 ggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaatttatca 665  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||    
T  35743 ggtcaaatattccacaaaattcacaaggtggtgaaagaagagcaggtgtgacgaaatttacacttaatttatca 35670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 456 - 665
Target Start/End: Original strand, 12776 - 13005
Alignment:
Q  456 taaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg------------------tacat 536  Q
    |||||||| |||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||| |||| |                  || |     
T  12776 taaaatttccaagctggatttctgatggactctttgattgtttgcataaccgggtggtgttgtttgttgttcaaaaggatttttaggagttttgttataa 12875  T
Q  537 aaattttgctcgggactattaa-caacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagca 635  Q
    ||||||||||||||||  || | ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| | |||||    
T  12876 aaattttgctcgggacatttcagcaacactacctagttggcattcaacaccattatggccaagtattccacaaaattcacaaggtggtgaaataggagca 12975  T
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    |||||||||||||||||| |||||||||||    
T  12976 ggtgtgacgacacttacacttaatttatca 13005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 577 - 665
Target Start/End: Original strand, 1 - 89
Alignment:
Q  577 attcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaatttatca 665  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1 attcaacactagtatggtcaagtattccacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaatttatca 89  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 455 - 665
Target Start/End: Complemental strand, 22097 - 21868
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg------------------taca 535  Q
    ||||||||| |||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||                  || |    
T  22097 gtaaaatttccaagctagatttctgagggactctttggttatttgcataaccgggtggtgttgtttgttgtccaaagggatttttaggagttttgttata 21998  T
Q  536 taaattttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagca 635  Q
     || |||||||||||||| | |  |||||||||||||||| | ||||||||| ||||| ||||||||| | |||||||||||||| |||||||| |||||    
T  21997 aaatttttgctcgggactttcagtaacactacctagttggtagtcaacaccattatggccaagtattccagaaaattcacaaggttgtgaaacaggagca 21898  T
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    ||||||||||||||| || |||||||||||    
T  21897 ggtgtgacgacacttgcacttaatttatca 21868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 66; Significance: 8e-29; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 580 - 665
Target Start/End: Original strand, 10688 - 10773
Alignment:
Q  580 caacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaatttatca 665  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  10688 caacactagtatggccaagtattccacaaaattcacaaggtggtgaaacaagagcacgtgtgacgacacttacacttaatttatca 10773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 580 - 665
Target Start/End: Original strand, 14791 - 14876
Alignment:
Q  580 caacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagttaatttatca 665  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  14791 caacactagtatggccaagtattccacaaaattcacaaggtggtgaaacaagagcacgtgtgacgacacttacacttaatttatca 14876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 455 - 529
Target Start/End: Original strand, 10565 - 10640
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10565 gtaaaatttccaagctggatttctgagggactctttggttgtttgcataaacgggtggtgttatttgttgtccaaa 10640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 455 - 529
Target Start/End: Original strand, 14668 - 14743
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14668 gtaaaatttccaagctggatttctgagggactctttggttgtttgcataaacgggtggtgttatttgttgtccaaa 14743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 455 - 531
Target Start/End: Complemental strand, 4334 - 4257
Alignment:
Q  455 gtaaaattttcaagctggattt-tgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg 531  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4334 gtaaaatttccaagctggatttctgagggactctttggttgtttgcataaccgggtggtgttgtttgttgtccaaagg 4257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 592
Target Start/End: Complemental strand, 4233 - 4178
Alignment:
Q  537 aaattttgctcgggactattaacaacactacctagttggcattcaacaccagtatg 592  Q
    |||||||||||| |||| | | |||||||||| |||||||||||||||||| ||||    
T  4233 aaattttgctcgagactttcagcaacactacccagttggcattcaacaccattatg 4178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 542 - 661
Target Start/End: Complemental strand, 29953438 - 29953319
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtg 641  Q
    |||||| ||||| | ||||||||||| ||||||||||||||| ||||||||  ||| ||||| ||||| ||||||||||||||||    |||||||||||    
T  29953438 ttgctcaggactttcaacaacactacttagttggcattcaacgccagtatgaccaaatattccacaaacttcacaaggtggtgaagtgggagcaggtgtg 29953339  T
Q  642 acgacacttacagttaattt 661  Q
    || ||||||||| |||||||    
T  29953338 acaacacttacacttaattt 29953319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 25354017 - 25353943
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  25354017 taaaagttccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgcttgttgtccaaa 25353943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 25360296 - 25360222
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  25360296 taaaagttccaagctggatttttgagggactctttggttgtttgcataactaggtggtgttgtttgttgtccaaa 25360222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 557 - 649
Target Start/End: Original strand, 24369675 - 24369767
Alignment:
Q  557 aacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||| |||||||||||||||||||||| ||| |||| |||| ||| | | | | ||||||||| ||||||||| ||||||||||||| |||||    
T  24369675 aacagcactacctagttggcattcaacgccaatatgatcaaatataccatagacttcacaaggaggtgaaacaggagcaggtgtgacaacact 24369767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 556 - 649
Target Start/End: Complemental strand, 25353859 - 25353766
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| ||||||||||||| |||||    
T  25353859 taacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgacaacact 25353766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 556 - 649
Target Start/End: Complemental strand, 25360137 - 25360044
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| ||||||||||||| |||||    
T  25360137 taacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgacaacact 25360044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 456 - 529
Target Start/End: Original strand, 15282 - 15353
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  |   ||||||||||||||||||||    
T  15282 taaaagttccaagctggatttttgagggactctttggttgtttgcataactg---ggtgttgtttgttgtccaaa 15353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 525
Target Start/End: Original strand, 24369536 - 24369587
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtc 525  Q
    ||||||||||||||| |||| |||| |||| |||||||||||||||||||||    
T  24369536 ttttgagggactcttcggttatttgaataaccgggtggtgttgtttgttgtc 24369587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 23138962 - 23139012
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatg 592  Q
    |||||| |||||  ||||||||||||||||||| |||||||||||||||||    
T  23138962 ttgctcaggacttctaacaacactacctagttgacattcaacaccagtatg 23139012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 592
Target Start/End: Original strand, 23550752 - 23550802
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatg 592  Q
    |||||| |||||  ||||||||||||||||||| |||||||||||||||||    
T  23550752 ttgctcaggacttctaacaacactacctagttgacattcaacaccagtatg 23550802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 649
Target Start/End: Original strand, 15438 - 15531
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||||||||||| ||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| ||||||||||||| |||||    
T  15438 taacaacactacttagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgacaacact 15531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 529
Target Start/End: Original strand, 24021927 - 24021982
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||| ||||||| |||||||||||||| || ||| ||||||| |||||||||||||    
T  24021927 tttttagggactttttggttgtttgcaaaatcggatggtgttatttgttgtccaaa 24021982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 529
Target Start/End: Original strand, 24823785 - 24823839
Alignment:
Q  475 tttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||| |||||| ||| || || | |||||||||||||||||||||||    
T  24823785 tttgagggactccttggttattttcaaaaccaggtggtgttgtttgttgtccaaa 24823839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 606 - 642
Target Start/End: Original strand, 23249487 - 23249523
Alignment:
Q  606 caaaattcacaaggtggtgaaacaagagcaggtgtga 642  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  23249487 caaacttcacaaggaggtgaaacaagagcaggtgtga 23249523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 119917 - 119843
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  119917 taaaaattccaagctggatttttgagggactctttggttgtttgcataactgggtggtgttgtttgttgtccaaa 119843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0860 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0860
Description:

Target: scaffold0860; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 455 - 531
Target Start/End: Original strand, 4958 - 5035
Alignment:
Q  455 gtaaaattttcaagctggattttg-agggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaagg 531  Q
    ||||||||| |||||||||||||  |||||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  4958 gtaaaatttccaagctggattttttagggactcttaggttgtttgcataaccaggtggtgttgtttgttgtccaaagg 5035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 557 - 665
Target Start/End: Original strand, 1972 - 2080
Alignment:
Q  557 aacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagtt 656  Q
    ||||||||||| ||||||||||||||| ||||||||| ||| ||| | ||| | ||| || ||||||||||||  ||||| |||||| ||| ||||| ||    
T  1972 aacaacactacttagttggcattcaacgccagtatggccaaatataccacatacttcgcatggtggtgaaacagaagcagatgtgacaacaattacactt 2071  T
Q  657 aatttatca 665  Q
    |||||||||    
T  2072 aatttatca 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 456 - 521
Target Start/End: Original strand, 1820 - 1886
Alignment:
Q  456 taaaattttcaagctggattttg-agggactctttggttgtttgcataaacgggtggtgttgtttgt 521  Q
    ||||| ||||||||||||||||  |||||||| |||||||||||||||| ||||||||| |||||||    
T  1820 taaaagtttcaagctggattttttagggactccttggttgtttgcataaccgggtggtgctgtttgt 1886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 663
Target Start/End: Original strand, 10245 - 10351
Alignment:
Q  557 aacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacacttacagtt 656  Q
    |||| |||||||||||||||||||||||||||| |||  || |||   ||| | | |||| |||||||||||| ||||||||||||| ||||||||| ||    
T  10245 aacagcactacctagttggcattcaacaccagtgtggcaaaatatatcacatattgcacatggtggtgaaacatgagcaggtgtgacaacacttacactt 10344  T
Q  657 aatttat 663  Q
    || ||||    
T  10345 aacttat 10351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 466 - 529
Target Start/End: Complemental strand, 14862 - 14798
Alignment:
Q  466 aagctggatttt-gagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||||||| ||||||||||||    
T  14862 aagctggatttttgagggactctttggttgttttcataactgggtggtgttgcttgttgtccaaa 14798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 637
Target Start/End: Complemental strand, 14728 - 14633
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcagg 637  Q
    |||||| |||||  |||||||||||||||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| |||||||    
T  14728 ttgctcaggacttctaacaacactacctagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcagg 14633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 529
Target Start/End: Original strand, 10668 - 10723
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||| |||||||||||||||||||||  || |||||||||||||||||||||    
T  10668 ttttgaggaactctttggttgtttgcataactggatggtgttgtttgttgtccaaa 10723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 563 - 649
Target Start/End: Complemental strand, 170032 - 169946
Alignment:
Q  563 actacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||||||||||| |||||||| ||||||||| ||| ||| | ||  | ||||||||| ||||||||| ||||||||| ||| |||||    
T  170032 actacctagttgacattcaacgccagtatggccaaatataccactgacttcacaaggaggtgaaacaggagcaggtgagacaacact 169946  T

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Target: scaffold0146 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 649
Target Start/End: Complemental strand, 38731 - 38638
Alignment:
Q  556 taacaacactacctagttggcattcaacaccagtatggtcaagtattctacaaaattcacaaggtggtgaaacaagagcaggtgtgacgacact 649  Q
    |||||||||||| ||||||||| ||||  ||| ||||| ||| ||  | ||||| ||||||||| ||||| ||| ||||||||||||| |||||    
T  38731 taacaacactacttagttggcaatcaatgccaatatggccaaatacaccacaaacttcacaaggaggtgatacaggagcaggtgtgacaacact 38638  T

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Target: scaffold0146; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 503
Target Start/End: Complemental strand, 38886 - 38838
Alignment:
Q  456 taaaattttcaagctggatttt-gagggactctttggttgtttgcataa 503  Q
    ||||| || ||||||||||||| |||||||||||||||||| |||||||    
T  38886 taaaagttccaagctggatttttgagggactctttggttgtatgcataa 38838  T

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Target: scaffold0357 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 529
Target Start/End: Original strand, 1412 - 1467
Alignment:
Q  474 ttttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||| |||| |||||| |||||| || ||||||||| |||||||||||||||    
T  1412 ttttgaggtactccttggttatttgcaaaaccgggtggtgctgtttgttgtccaaa 1467  T

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Target: scaffold0357; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 1537 - 1586
Alignment:
Q  542 ttgctcgggactattaacaacactacctagttggcattcaacaccagtat 591  Q
    |||||| |||||  ||||||||||||||||||| |||||||||| |||||    
T  1537 ttgctcaggacttctaacaacactacctagttgacattcaacactagtat 1586  T

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Target: scaffold0037 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 455 - 529
Target Start/End: Complemental strand, 49697 - 49622
Alignment:
Q  455 gtaaaattttcaagctggat-tttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||| || |||| ||||| |||||||||||| |||||| ||| || || | |||||||||||||||||||||||    
T  49697 gtaaaagttccaagttggatctttgagggactccttggttattttcaaaaccaggtggtgttgtttgttgtccaaa 49622  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 529
Target Start/End: Original strand, 16141 - 16195
Alignment:
Q  475 tttgagggactctttggttgtttgcataaacgggtggtgttgtttgttgtccaaa 529  Q
    |||||||||||| |||||| ||| || || | |||||||||||||||||||||||    
T  16141 tttgagggactccttggttattttcaaaaccaggtggtgttgtttgttgtccaaa 16195  T

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Target: scaffold0145 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 636 - 665
Target Start/End: Original strand, 1 - 30
Alignment:
Q  636 ggtgtgacgacacttacagttaatttatca 665  Q
    ||||||||||||||||||||||||||||||    
T  1 ggtgtgacgacacttacagttaatttatca 30  T

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