View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5155-Insertion-7 (Length: 527)

Name: NF5155-Insertion-7
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5155-Insertion-7
NF5155-Insertion-7
[»] chr1 (1 HSPs)
chr1 (8-527)||(22379424-22379943)


Alignment Details
Target: chr1 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 22379943 - 22379424
Alignment:
Q  8 cctctcaatcctttgaatattccagtcaccattatcaacacattctccgttactccatcgaagcctattcctgtcaaaccaggtgactgtttatatcttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22379943 cctctcaatcctttgaatattccagtcaccattatcaacacattctccgttactccatcgaagcctattcctgtcaaaccaggtgactgtttatatcttt 22379844  T
Q  108 caaacctcgatgacgtgattggagcacgcgtcttcacaccgacggtttacttttatcaatcagacaattcaagtacgtctttccaaaaaccggtcgcgga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22379843 caaacctcgatgacgtgattggagcacgcgtcttcacaccgacggtttacttttatcaatcagacaattcaagtacgtctttccaaaaaccggtcgcgga 22379744  T
Q  208 aatacttggccgcgctctagctgacgttttggttccctactaccctctctcgggaaggttaagagagacgaaaaatggtaaactggaagtatttttcgga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22379743 aatacttggccgcgctctagctgacgttttggttccctactaccctctctcgggaaggttaagagagacgaaaaatggtaaactggaagtatttttcgga 22379644  T
Q  308 gaagaagaagaacaaggagcgttaatggttgaagcaagatcaaacatagctttatctgaactaggtgattttgctgctccaaatccatcttgggaaccat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22379643 gaagaagaagaacaaggagcgttaatggttgaagcaagatcaaacatagctttatctgaactaggtgattttgctgctccaaatccatcttgggaaccat 22379544  T
Q  408 tgatattcaaatttccaaatgaagaacaatacaaagtgttggaaatgccacttgttatagctcaggtaacaatcttcacatgtggtggatttagcctcgg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22379543 tgatattcaaatttccaaatgaagaacaatacaaagtgttggaaatgccacttgttatagctcaggtaacaatcttcacatgtggtggatttagcctcgg 22379444  T
Q  508 tttacgcctttgtcattgta 527  Q
    ||||||||||||||||||||    
T  22379443 tttacgcctttgtcattgta 22379424  T

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