View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5155-Insertion-8 (Length: 131)
Name: NF5155-Insertion-8
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5155-Insertion-8 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 14488199 - 14488323
Alignment:
| Q |
7 |
aagtctcacacaccacaaataaaatagttgttgatcgtctaacatcgcctgcaatgannnnnnnctcaggtatggaaatctagaaaacctttgttcttca |
106 |
Q |
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| T |
14488199 |
aagtctcacacaccacaaataaaatagttgttgacagtctaacatcgcctgcaatgatttttttctcaggtatggaaatctagaaaacctttgttcttca |
14488298 |
T |
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| Q |
107 |
tctttgtttctatgattttttatac |
131 |
Q |
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| T |
14488299 |
tctttgtttctatgattttttatac |
14488323 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 573776 - 573830
Alignment:
| Q |
77 |
tatggaaatctagaaaacctttgttcttcatctttgtttctatgattttttatac |
131 |
Q |
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| T |
573776 |
tatggaaatctagaaaccctttgttcttcatctttgtttctccgattttctatac |
573830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 573676 - 573728
Alignment:
| Q |
77 |
tatggaaatctagaaaac-ctttgttcttcatctttgtttctatgattttttat |
129 |
Q |
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| T |
573676 |
tatggaaatct-gaaaactctttgttcttcatctttgtttctatgattttttat |
573728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 49244844 - 49244884
Alignment:
| Q |
77 |
tatggaaatctagaaaacctttgttcttcatctttgtttct |
117 |
Q |
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| T |
49244844 |
tatggaaatctggaaaccctttgttcttcatctttgtttct |
49244884 |
T |
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