View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5155-Insertion-9 (Length: 418)

Name: NF5155-Insertion-9
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5155-Insertion-9
NF5155-Insertion-9
[»] chr7 (4 HSPs)
chr7 (80-418)||(42029690-42030028)
chr7 (260-333)||(10325121-10325194)
chr7 (267-307)||(717501-717541)
chr7 (253-305)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (253-355)||(51080720-51080822)
chr1 (253-305)||(2536530-2536582)
chr1 (253-305)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (253-355)||(40287065-40287167)
chr2 (253-305)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (260-316)||(38998907-38998963)
chr3 (260-307)||(27265807-27265854)
chr3 (253-305)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (260-307)||(13757556-13757603)
chr6 (260-307)||(19047096-19047143)
chr6 (253-305)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (253-307)||(14856970-14857024)
chr5 (271-355)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (263-308)||(14541224-14541269)
chr8 (264-356)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (264-307)||(2087389-2087432)
chr4 (253-305)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (253-305)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 80 - 418
Target Start/End: Original strand, 42029690 - 42030028
Alignment:
Q  80 tttaggttggaattggatggatgaggtgttcatcaatcttttgtctaaaaataaacgatttgannnnnnngttgagggaagcaactcaatgcatttaagt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  42029690 tttaggttggaattggatggatgaggtgttcatcaatcttttgtctaaaaataaacgatttgacttttttgttgagggaagcaactcaatgcatttaagt 42029789  T
Q  180 gggactagcattatatgggaccaaatacatgaaggaacatcatcataaaaaattatatgggactagctgtatcaattcacgagcgaccccattagtttgc 279  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||| ||| ||||||| |||||| | |||||||||||||||||||||||||| |||||    
T  42029790 gggaccagcattatatgggaccaaatacatgaaggtatatcatcatcaaacattatataggactaaccgtatcaattcacgagcgaccccattaatttgc 42029889  T
Q  280 ctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagt 379  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42029890 ctcatattaaattcaacatgagagtttttgaaactattatggaacatctgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagt 42029989  T
Q  380 cgagagcaaaatccaaattataaagttgaaggtctaatg 418  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42029990 cgagagcaaaatccaaattataaagttgaaggtctaatg 42030028  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 10325121 - 10325194
Alignment:
Q  260 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtcta 333  Q
    |||||||| |||| ||||||||| |||||||||| ||||||||||| || |||| |||||| |||| |||||||    
T  10325121 gagcgacctcattcgtttgcctcctattaaactcgacatgagagttgtttaaacaattaagtaacaattgtcta 10325194  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 717541 - 717501
Alignment:
Q  267 cccattagtttgcctcatattaaactcaacatgagagtttt 307  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  717541 cccattagcttgtctcctattaaactcaacatgagagtttt 717501  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 40901853 - 40901905
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 305  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  40901853 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 40901905  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 355
Target Start/End: Original strand, 51080720 - 51080822
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 352  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  51080720 aattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 51080819  T
Q  353 caa 355  Q
    |||    
T  51080820 caa 51080822  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 2536530 - 2536582
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 305  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  2536530 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 2536582  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 11351645 - 11351697
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 305  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  11351645 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 11351697  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 355
Target Start/End: Original strand, 40287065 - 40287167
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 352  Q
    |||||| ||| ||||||||||| |||||||||||||||||  |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  40287065 aattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 40287164  T
Q  353 caa 355  Q
    |||    
T  40287165 caa 40287167  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 29894369 - 29894421
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 305  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  29894369 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 29894421  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 38998963 - 38998907
Alignment:
Q  260 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactat 316  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||    
T  38998963 gagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactat 38998907  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 27265854 - 27265807
Alignment:
Q  260 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 307  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  27265854 gagcgacctcattagtttgtctcttattaaactcaacatgagagtttt 27265807  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 36684968 - 36684916
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 305  Q
    |||||| ||||||||||||||| ||||||| |||| ||||| |||||||||||    
T  36684968 aattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagtt 36684916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 13757556 - 13757603
Alignment:
Q  260 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 307  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  13757556 gagcgacctcattagtttgcttcttattaaactcaacatgagagtttt 13757603  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 19047143 - 19047096
Alignment:
Q  260 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 307  Q
    |||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  19047143 gagcgaccacattagcttgcctcctattaaactcgacatgagagtttt 19047096  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 942756 - 942704
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 305  Q
    |||||||||||||||||||| | ||||||| |||| ||||| |||| ||||||    
T  942756 aattcacgagcgaccccattggcttgcctcctattgaactcgacattagagtt 942704  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 14856970 - 14857024
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 307  Q
    |||||| |||||| | |||| |||||||||||||||||||| |||||||||||||    
T  14856970 aattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagtttt 14857024  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 32163124 - 32163040
Alignment:
Q  271 ttagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaa 355  Q
    |||||||||||| |||||||||| | |||||||||||  |||||||   | ||||  |||||| | |||| ||||||||||||||    
T  32163124 ttagtttgcctcctattaaactcgatatgagagttttgaaaactatcctgaaacaactgtctacaggcagtaataatacaaccaa 32163040  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 14541269 - 14541224
Alignment:
Q  263 cgaccccattagtttgcctcatattaaactcaacatgagagttttt 308  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||    
T  14541269 cgaccacattagtttgcctcatattaaactcaatacgagagttttt 14541224  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 11911423 - 11911515
Alignment:
Q  264 gaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaa 356  Q
    ||||||||| |||| |||| |||| ||||| |||||||||||||  ||||||||||  |||  ||||||| || || | || |||||||||||    
T  11911423 gaccccattcgtttacctcctattgaactcgacatgagagttttgaaaactattaattaactattgtctacatacaaatatgatacaaccaaa 11911515  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 2087389 - 2087432
Alignment:
Q  264 gaccccattagtttgcctcatattaaactcaacatgagagtttt 307  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||    
T  2087389 gaccccattagtttgcctcgtattaaatttaacatgagagtttt 2087432  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 1394188 - 1394136
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 305  Q
    |||||| || |||||||||||| ||||||| |||| ||||| |||||||||||    
T  1394188 aattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagtt 1394136  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 48165 - 48113
Alignment:
Q  253 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 305  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  48165 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 48113  T

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