View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5155_high_1 (Length: 390)
Name: NF5155_high_1
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5155_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 28832452 - 28832823
Alignment:
| Q |
19 |
cttgtgactttatctattttcctttctgaatgcataggctttctttaattgaaattgtcttcaaaatctgaatttccagtaaggcctaactaattaaatt |
118 |
Q |
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| T |
28832452 |
cttgtgactttatctattttcctttctgaatgcataggctttctttaattgaaattgtcttccaaatctgaatttctagtaaggcctaactaattaaatt |
28832551 |
T |
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| Q |
119 |
tgagatcaccaagctttgattttat----gcattctttgaacctaagagtttgtccatatccacattcatnnnnnnnttcaaagttatggatagatatga |
214 |
Q |
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| T |
28832552 |
tgagatcaccaagctttgattttatatatgcattctttgaacctaagagtttgtccatatccacattcataaaaaaattcaaagttatggatagatatgg |
28832651 |
T |
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| Q |
215 |
atgttttgaattcattattgtttttagcatgccccctccatccatggttgcgtgtactatgttatcacttttccataaaaagtttattgtcatatttatt |
314 |
Q |
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| T |
28832652 |
atattttgaattcattattgtttttagcatgccccctccatccatggttgcgtgtactatgttatcacttttccataaaaagtttattgtcatatttatt |
28832751 |
T |
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| Q |
315 |
gtgtatttcaggttaataattttggtaccatgtacgttcctttcaagttattgatatttagaataatctacc |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28832752 |
gtgtatttcaggttaataattttggtaccatgtacgttcctttcaagttattgatatttagaataatgtacc |
28832823 |
T |
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