View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5155_low_3 (Length: 295)
Name: NF5155_low_3
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5155_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 45447425 - 45447691
Alignment:
| Q |
14 |
tcatcatccattgctaactcttaggtgaggatccgaatcctctaaatctgtattttctctcaatcctctcaacaataaaatccaaacattaatttaatct |
113 |
Q |
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| T |
45447425 |
tcatcatccattgctaactcttaggtgaggatccgaatcctctaaatctgtattttctctcaatcctctcaacaataaaatccaaacattaatttaatct |
45447524 |
T |
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| Q |
114 |
aagggtgaaaaattgaaagaccaaattattaaaaccaacacattccacaaaacagaacacaatcctaatagcgcatagaaccattctagcgtcgacttgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45447525 |
aagggtgaaaaattgaaagaccaaattattaaaaccaacacattccacaaaacagaacacaatcctaatagcgcatagaaccattctagcgtcgacttgt |
45447624 |
T |
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| Q |
214 |
tttcttcttcggtgtgtatcttctctctttcctttttattgatttctatagagttgttatgtcttct |
280 |
Q |
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| T |
45447625 |
tttcttcttcggtgtgtatcttctctcttttctttttattgatttctatagagttgttatgtcttct |
45447691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 25562428 - 25562160
Alignment:
| Q |
14 |
tcatcatccattgctaactcttaggtgaggatccgaatcctctaaatctgtattttctctcaatcctctcaacaa-taaaatccaaacattaatttaatc |
112 |
Q |
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|||| ||| ||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25562428 |
tcataatctattgctatctcttaggtgaggatatggatcctctcaatctgtattttctctcaatcctctcaacaaataaaatccaaacattaatttaatc |
25562329 |
T |
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| Q |
113 |
taaggg-tgaaaaattgaaagaccaaattattaaaaccaacacattccacaaaacagaacacaatcctaatagcgcatagaaccattctagcgtcgactt |
211 |
Q |
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| T |
25562328 |
taaccgatggaaaattgaaagaacaaattattaaaacaaacacattccacgaaatagaacacaatcctaatagcgcatagaactgttctagcgtcaacct |
25562229 |
T |
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| Q |
212 |
gttttcttcttcggtgtgtatcttctctctttcctttttattgatttctatagagttgttatgtcttct |
280 |
Q |
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| T |
25562228 |
gttttcttcttcggtgtgcatcttctctctttaatttttattgatttctttagagttgttatgtcttct |
25562160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 46605562 - 46605296
Alignment:
| Q |
14 |
tcatcatccattgctaactcttaggtgaggatccgaatcctctaaatctgtattttctctcaatcctctcaacaataaaatccaaacattaatttaatct |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46605562 |
tcatcatccattgctaactcttaggtgaggatccggatcctctaaatctgtattttctctcaatcctctcaacaataaaatccaaacattaatttaatct |
46605463 |
T |
|
| Q |
114 |
aagggtgaaaaattgaaagaccaaattattaaaaccaacacattccacaaaacagaacacaatcctaatagcgcatagaaccattctagcgtcgacttgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46605462 |
aagggtgaaaaattgaaagaccaaattattaaaaccaacacattccacaaaacagaacacaatcctaatagcgcatagaaccattctagcgtcgacttgt |
46605363 |
T |
|
| Q |
214 |
tttcttcttcggtgtgtatcttctctctttcctttttattgatttctatagagttgttatgtcttct |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46605362 |
tttcttcttcggtgtgtatcttctctctttcctttttattgatttctatagagttgttatgtcttct |
46605296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 280
Target Start/End: Original strand, 31883936 - 31884119
Alignment:
| Q |
96 |
caaacattaatttaatctaaggg---tgaaaaattgaaagaccaaattattaaaaccaacacattccacaaaacagaacacaatcctaatagcgcataga |
192 |
Q |
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| T |
31883936 |
caaacattaatttaatctaacggagatgaaaaattgaaggaacaaattattaaaacaaacatattccacaaaatagaacacaatcctaatagcgcataga |
31884035 |
T |
|
| Q |
193 |
accattctagcgtcgacttgttttcttcttcggtgtgtatcttctctctttcctttttattgatttctatagagttgttatgtcttct |
280 |
Q |
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| T |
31884036 |
accgttctaacgtcgacgtgtctt----ttctgtgtgtatcttctctcttttatttttattgatttttttagagttgttatgtcttct |
31884119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 31883861 - 31883904
Alignment:
| Q |
42 |
ggatccgaatcctctaaatctgtattttctctcaatcctctcaa |
85 |
Q |
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| T |
31883861 |
ggatccggatcctctcaatcagtattttctctcaatcctctcaa |
31883904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 36011437 - 36011517
Alignment:
| Q |
68 |
ttctctcaatcctctcaacaataaaatccaaacattaatttaatctaagggtgaaaaattgaaagaccaaattattaaaac |
148 |
Q |
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| T |
36011437 |
ttctctcaatactctcaacaataaaatccaaacattgtattaatctacggatgaaaaactgatagaacaaattattaaaac |
36011517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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