View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5155_low_8 (Length: 224)
Name: NF5155_low_8
Description: NF5155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5155_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 36865493 - 36865685
Alignment:
| Q |
16 |
tcattaaaaacatagctcttagtacacttatttactacagacatgggcctaaagaggagtaagatcatcttgtaaaacattttcagaaagaaacttactt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36865493 |
tcattaaaaacatagctcttagtacacttatttactacagacatgggcctaaagaggagtaagatcatcttgtaaaacattttcagaaagaaacttactt |
36865592 |
T |
|
| Q |
116 |
ggaataagaaggtattgcttattgttggcttctacttctggatgtatctctctaggttactctggtggtaatgcagtctctagaataaagaag |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36865593 |
gaaataagaaggtattgcttattgttggcttctacttctggatgtatctgtctaggttactctggtggtaatgcagtctctagaataaagaag |
36865685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 42204462 - 42204412
Alignment:
| Q |
66 |
aaagaggagtaagatcatcttgtaaaacattttca-gaaagaaacttactt |
115 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42204462 |
aaagaggagcatgatcatcttgtaaaacattttcataaaagaaacttactt |
42204412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University